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The map label for this gene is ydfH [H]

Identifier: 73538964

GI number: 73538964

Start: 1878724

End: 1879452

Strand: Reverse

Name: ydfH [H]

Synonym: Reut_B5139

Alternate gene names: 73538964

Gene position: 1879452-1878724 (Counterclockwise)

Preceding gene: 73538971

Following gene: 73538962

Centisome position: 68.94

GC content: 61.18

Gene sequence:

>729_bases
ATGCAAGATTCCATGTCATCAGCCGATACCACCCTCGCATCCATGCTTCCGAAGGTCGAGCGGCAACGCCTGCATGACAC
GGTCGTGGGCCACCTTCGCAACTTCATCGTGGAGGGGGTACTGAAGGCCGGCACAAAGCTTAACGAGCGAGAGCTTTGCG
AAACGCTTGGCATCTCGCGCACACCGCTGCGCGAGGCACTGAAGGTGCTCGCGGCGGAAGGGCTGATCGATATCTCGCCC
AATCGCGGCGCCACGGTAGCCAGGTTGTCGGCAACGGAAATCCGGGATACCTTCGAGTTGATGAGTGGCCTGGAGGCGTT
TTCGGGAGAGCTGGCCTGCGAACGCATGACCGCTGTCGAGCTTGCAGAACTCAAAGCCTTGCACTACACCATGCTTGCCT
GCCGTGCGCAGGAAGACCTGTCCGGTTACTACGACTGCAACCGGCAGATTCATGACCGCATCAATCAGGCTGCGCGCAAC
GCTGCGCTTCGCCAGACCTACCTGGCCGTCAACCGCAGGCTGCAAGCGCTGCGATTCCGTTCGAACTTCCAGAAGACGAA
GTGGGACAGCGCCATCCATGACCACGATGAAATGCTGATCGCGCTGGAGGCGCGCGATGGCAAGCGACTCGCGGCAATCC
TGCGCCAGCATTTGCTCGACAAGCGCGACGCAGTGCTGCTCATGCTGGCAGCCGAGGCGGACGCCGCGCCCGTGACATCG
GAATCCTGA

Upstream 100 bases:

>100_bases
AACGCAGTGTTTACCCCGATCTAAGGGGATCTTGCGCCTTGGCGGCGCTGTGCTATGGGTCTGCTAAAATCCCTTCAAAC
GCCCATTCGTTGGACTTTGC

Downstream 100 bases:

>100_bases
TTACACGGGAGACTGTCTTCTCAGCAGCACGAGGTCAGAGTAGCCGCGCCGCAAGAATCGAAGTACGCGCGTGGCCAATT
CAAGGTCTCCACCATTCATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MQDSMSSADTTLASMLPKVERQRLHDTVVGHLRNFIVEGVLKAGTKLNERELCETLGISRTPLREALKVLAAEGLIDISP
NRGATVARLSATEIRDTFELMSGLEAFSGELACERMTAVELAELKALHYTMLACRAQEDLSGYYDCNRQIHDRINQAARN
AALRQTYLAVNRRLQALRFRSNFQKTKWDSAIHDHDEMLIALEARDGKRLAAILRQHLLDKRDAVLLMLAAEADAAPVTS
ES

Sequences:

>Translated_242_residues
MQDSMSSADTTLASMLPKVERQRLHDTVVGHLRNFIVEGVLKAGTKLNERELCETLGISRTPLREALKVLAAEGLIDISP
NRGATVARLSATEIRDTFELMSGLEAFSGELACERMTAVELAELKALHYTMLACRAQEDLSGYYDCNRQIHDRINQAARN
AALRQTYLAVNRRLQALRFRSNFQKTKWDSAIHDHDEMLIALEARDGKRLAAILRQHLLDKRDAVLLMLAAEADAAPVTS
ES
>Mature_242_residues
MQDSMSSADTTLASMLPKVERQRLHDTVVGHLRNFIVEGVLKAGTKLNERELCETLGISRTPLREALKVLAAEGLIDISP
NRGATVARLSATEIRDTFELMSGLEAFSGELACERMTAVELAELKALHYTMLACRAQEDLSGYYDCNRQIHDRINQAARN
AALRQTYLAVNRRLQALRFRSNFQKTKWDSAIHDHDEMLIALEARDGKRLAAILRQHLLDKRDAVLLMLAAEADAAPVTS
ES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=205, Percent_Identity=25.3658536585366, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789353, Length=85, Percent_Identity=42.3529411764706, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27015; Mature: 27015

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSMSSADTTLASMLPKVERQRLHDTVVGHLRNFIVEGVLKAGTKLNERELCETLGISR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
TPLREALKVLAAEGLIDISPNRGATVARLSATEIRDTFELMSGLEAFSGELACERMTAVE
CCHHHHHHHHHHCCCEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAELKALHYTMLACRAQEDLSGYYDCNRQIHDRINQAARNAALRQTYLAVNRRLQALRFR
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNFQKTKWDSAIHDHDEMLIALEARDGKRLAAILRQHLLDKRDAVLLMLAAEADAAPVTS
HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
ES
CC
>Mature Secondary Structure
MQDSMSSADTTLASMLPKVERQRLHDTVVGHLRNFIVEGVLKAGTKLNERELCETLGISR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
TPLREALKVLAAEGLIDISPNRGATVARLSATEIRDTFELMSGLEAFSGELACERMTAVE
CCHHHHHHHHHHCCCEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAELKALHYTMLACRAQEDLSGYYDCNRQIHDRINQAARNAALRQTYLAVNRRLQALRFR
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNFQKTKWDSAIHDHDEMLIALEARDGKRLAAILRQHLLDKRDAVLLMLAAEADAAPVTS
HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
ES
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]