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The map label for this gene is cspA [H]

Identifier: 73538959

GI number: 73538959

Start: 1873576

End: 1873779

Strand: Direct

Name: cspA [H]

Synonym: Reut_B5134

Alternate gene names: 73538959

Gene position: 1873576-1873779 (Clockwise)

Preceding gene: 73538955

Following gene: 73538963

Centisome position: 68.73

GC content: 51.47

Gene sequence:

>204_bases
ATGGCAACTGGCATTGTGAAGTGGTTCAACAATGAAAAGGGTTATGGATTCATCACCCCGGATGACGGTGGCAAGGATCT
GTTTGCGCATCACAGCGAAATCCAGGGCAGCGGATTCAAGTCGCTGGATGAAGGAGCGAAAGTGGAGTTCGACGTGACAC
AAGGCCAGAAGGGCCTGCAAGCGTCGAATATTCGCAAGCTATAG

Upstream 100 bases:

>100_bases
TGCTGACAGCTCGAGGCGCCGTATTGAAATTGGCGTGGCGATTCTTTGGTGCAACTTCGTCCGCACGCAGACTGTGTGTG
CGCAAAATTCCGAGGGCAAG

Downstream 100 bases:

>100_bases
TCGCTCTATAGTCGCCTGCGCCCAGGACAGCCTGGGCGGCATGGGCTTCACTGATACGAAGAACCCTCGGGTCGAACGTG
ATCTGTCTCGACCCGCGGAG

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MATGIVKWFNNEKGYGFITPDDGGKDLFAHHSEIQGSGFKSLDEGAKVEFDVTQGQKGLQASNIRKL

Sequences:

>Translated_67_residues
MATGIVKWFNNEKGYGFITPDDGGKDLFAHHSEIQGSGFKSLDEGAKVEFDVTQGQKGLQASNIRKL
>Mature_66_residues
ATGIVKWFNNEKGYGFITPDDGGKDLFAHHSEIQGSGFKSLDEGAKVEFDVTQGQKGLQASNIRKL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=63.0769230769231, Blast_Score=89, Evalue=8e-20,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=56.9230769230769, Blast_Score=87, Evalue=3e-19,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=59.375, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=59.375, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=55.2238805970149, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=55.3846153846154, Blast_Score=77, Evalue=1e-16,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=53.2258064516129, Blast_Score=75, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7315; Mature: 7184

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGIVKWFNNEKGYGFITPDDGGKDLFAHHSEIQGSGFKSLDEGAKVEFDVTQGQKGLQ
CCCCEEEECCCCCCEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
ASNIRKL
CCCEECC
>Mature Secondary Structure 
ATGIVKWFNNEKGYGFITPDDGGKDLFAHHSEIQGSGFKSLDEGAKVEFDVTQGQKGLQ
CCCEEEECCCCCCEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
ASNIRKL
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA