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The map label for this gene is ydcR [C]

Identifier: 73538407

GI number: 73538407

Start: 1260188

End: 1261558

Strand: Direct

Name: ydcR [C]

Synonym: Reut_B4580

Alternate gene names: 73538407

Gene position: 1260188-1261558 (Clockwise)

Preceding gene: 73538402

Following gene: 73538409

Centisome position: 46.23

GC content: 70.46

Gene sequence:

>1371_bases
GTGCTGACCTGGGCGCGCGGGTTTTCGGCCGGCGCCGGCCCGCGCTACCTGCAGATCGTCGGCTTCCTCGAGCAGGCGCT
GGCCGACGGCCTGCTGCTGCCCGGCGACCGGCTGCCGCCGCAGCGCGAACTGGCCGCCCGCCTTGGGGTGGACCTGACCA
CCGTCACCCGTGCGTTGAACGAGGCGCGGCGGCGCCGGCTGGTGGAATCGCGTGGAACGCTTGGCACTTTCGTCGCGGCA
CAGACCGCCGAACTGGCCCAGGTCGTCGATCTCAGCATGAACGTGCCGCCTCCGCCGGAAGGTGTCGATTTCAACGACGT
GATGCGCCGTGGCCTGACGCAGGTCACGCTGCGCACCGATGCCAGCCTGCTGATGACGTACCAGCTTGGCGGCGGCAGCG
CGTCCGAGCGTGCCGCGGGCGCGCAATGGCTGGCGCCGATGCTGGGCGCGGTCGAGCCTTCGCGTGTGGTGGTGTATCCG
GGTGCGCAGAGCGCGCTGGCGGCGCTGGTCCTGGCGCACAGCGCACCGGGCGACGCCATCGCCGCCGAGCCGCTGATCTA
CCCGGGCATGCGCCTCGCGGCCGCCACGCTGGGCCGCCGCATCGTGACGATCGGCGTCGATGCCGACGGCATGCGCCCCG
ACCTGCTTGAGGCCGCATGCCGCAACGAAGGCGTGCGGCTGGTGTATCTGAATCCGACCTCGCAGAACCCCACCACGCAC
ACCATGCCCGAAGCGCGCCGGCTGGAACTGGCGCGCATTGCCGCCGCCTGGGATGCGCTGATCATCGAAGACGATCCCTA
CTGGCTGCTCACGCCCGATGCGCCCCCGCCCATCGCGGCACTGGCACCGGAACGCGTTGCCTACGTATCGACACTATCGA
AGTGCCTGAGCCCGGGCCTGCGCACCGCTTACGTCGTGATGCCCGGTGGACCGGAGACGCAGGAAGCCATGCTGTCCGCG
CTGCGCGCCTTCAGCCTGATGGCGGCGCCGTTATCGATGGCGCTCGCGATGCAGTGGATACAGGACGGCTCGGCCACCGA
ACTGCTGGCCGGCATTCGCGCGGAAGCGGCCGCGCGTCAGGCCATCGCGCGCCAGTGGCTGCCTGGCTCCGGGGCGCTGT
CACCGGCCGGCATCCACCTTTGGCATGCACTGCCGAGCTACTGGAGCGCTGCGCGGTTCAGCCGTGCCGCGCTCGATGAA
CAACTGCGCGTCACGCCCTCTGACGCATTCCATGAAGGGCCGACGCCGCCCAACATGATCCGCATCTCGCTCGGCGGCGC
GGCGCAGCGTACGCAGCTGTCGATGGCACTGAAGCGGCTCGCGGACCTGCTGGCACGCAAGCCGCTCGATCAGGCAGCGG
CCGTGGTTTGA

Upstream 100 bases:

>100_bases
TTTGTATGGATTTACCTGGGGCGGTCGCGATGGTAAGGTAAGACAACATCCATACAAGGCAAACTTTTCGGTGACTATCC
ACCTACAAGAAAACCCTCAT

Downstream 100 bases:

>100_bases
AGGATACCTAGCCGTGCCGTTTCGGCAACCTGTCCCGGGCGGCTAGCGCAGCCAGTTGCCCGAGCTTTTCGAGCGCCATG
AACAGCGCCATATCGCGCTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MLTWARGFSAGAGPRYLQIVGFLEQALADGLLLPGDRLPPQRELAARLGVDLTTVTRALNEARRRRLVESRGTLGTFVAA
QTAELAQVVDLSMNVPPPPEGVDFNDVMRRGLTQVTLRTDASLLMTYQLGGGSASERAAGAQWLAPMLGAVEPSRVVVYP
GAQSALAALVLAHSAPGDAIAAEPLIYPGMRLAAATLGRRIVTIGVDADGMRPDLLEAACRNEGVRLVYLNPTSQNPTTH
TMPEARRLELARIAAAWDALIIEDDPYWLLTPDAPPPIAALAPERVAYVSTLSKCLSPGLRTAYVVMPGGPETQEAMLSA
LRAFSLMAAPLSMALAMQWIQDGSATELLAGIRAEAAARQAIARQWLPGSGALSPAGIHLWHALPSYWSAARFSRAALDE
QLRVTPSDAFHEGPTPPNMIRISLGGAAQRTQLSMALKRLADLLARKPLDQAAAVV

Sequences:

>Translated_456_residues
MLTWARGFSAGAGPRYLQIVGFLEQALADGLLLPGDRLPPQRELAARLGVDLTTVTRALNEARRRRLVESRGTLGTFVAA
QTAELAQVVDLSMNVPPPPEGVDFNDVMRRGLTQVTLRTDASLLMTYQLGGGSASERAAGAQWLAPMLGAVEPSRVVVYP
GAQSALAALVLAHSAPGDAIAAEPLIYPGMRLAAATLGRRIVTIGVDADGMRPDLLEAACRNEGVRLVYLNPTSQNPTTH
TMPEARRLELARIAAAWDALIIEDDPYWLLTPDAPPPIAALAPERVAYVSTLSKCLSPGLRTAYVVMPGGPETQEAMLSA
LRAFSLMAAPLSMALAMQWIQDGSATELLAGIRAEAAARQAIARQWLPGSGALSPAGIHLWHALPSYWSAARFSRAALDE
QLRVTPSDAFHEGPTPPNMIRISLGGAAQRTQLSMALKRLADLLARKPLDQAAAVV
>Mature_456_residues
MLTWARGFSAGAGPRYLQIVGFLEQALADGLLLPGDRLPPQRELAARLGVDLTTVTRALNEARRRRLVESRGTLGTFVAA
QTAELAQVVDLSMNVPPPPEGVDFNDVMRRGLTQVTLRTDASLLMTYQLGGGSASERAAGAQWLAPMLGAVEPSRVVVYP
GAQSALAALVLAHSAPGDAIAAEPLIYPGMRLAAATLGRRIVTIGVDADGMRPDLLEAACRNEGVRLVYLNPTSQNPTTH
TMPEARRLELARIAAAWDALIIEDDPYWLLTPDAPPPIAALAPERVAYVSTLSKCLSPGLRTAYVVMPGGPETQEAMLSA
LRAFSLMAAPLSMALAMQWIQDGSATELLAGIRAEAAARQAIARQWLPGSGALSPAGIHLWHALPSYWSAARFSRAALDE
QLRVTPSDAFHEGPTPPNMIRISLGGAAQRTQLSMALKRLADLLARKPLDQAAAVV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=316, Percent_Identity=24.3670886075949, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI33469970, Length=316, Percent_Identity=24.3670886075949, Blast_Score=80, Evalue=5e-15,
Organism=Escherichia coli, GI1787710, Length=451, Percent_Identity=25.2771618625277, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1790797, Length=470, Percent_Identity=22.9787234042553, Blast_Score=98, Evalue=9e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 48508; Mature: 48508

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTWARGFSAGAGPRYLQIVGFLEQALADGLLLPGDRLPPQRELAARLGVDLTTVTRALN
CCEECCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHCCHHHHHHHHHH
EARRRRLVESRGTLGTFVAAQTAELAQVVDLSMNVPPPPEGVDFNDVMRRGLTQVTLRTD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEECC
ASLLMTYQLGGGSASERAAGAQWLAPMLGAVEPSRVVVYPGAQSALAALVLAHSAPGDAI
CEEEEEEEECCCCCCHHHCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCC
AAEPLIYPGMRLAAATLGRRIVTIGVDADGMRPDLLEAACRNEGVRLVYLNPTSQNPTTH
CCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCC
TMPEARRLELARIAAAWDALIIEDDPYWLLTPDAPPPIAALAPERVAYVSTLSKCLSPGL
CCCHHHHHHHHHHHHHHCEEEEECCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHCCCC
RTAYVVMPGGPETQEAMLSALRAFSLMAAPLSMALAMQWIQDGSATELLAGIRAEAAARQ
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AIARQWLPGSGALSPAGIHLWHALPSYWSAARFSRAALDEQLRVTPSDAFHEGPTPPNMI
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHCCCCCCCCCEE
RISLGGAAQRTQLSMALKRLADLLARKPLDQAAAVV
EEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCC
>Mature Secondary Structure
MLTWARGFSAGAGPRYLQIVGFLEQALADGLLLPGDRLPPQRELAARLGVDLTTVTRALN
CCEECCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHCCHHHHHHHHHH
EARRRRLVESRGTLGTFVAAQTAELAQVVDLSMNVPPPPEGVDFNDVMRRGLTQVTLRTD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEECC
ASLLMTYQLGGGSASERAAGAQWLAPMLGAVEPSRVVVYPGAQSALAALVLAHSAPGDAI
CEEEEEEEECCCCCCHHHCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCC
AAEPLIYPGMRLAAATLGRRIVTIGVDADGMRPDLLEAACRNEGVRLVYLNPTSQNPTTH
CCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCC
TMPEARRLELARIAAAWDALIIEDDPYWLLTPDAPPPIAALAPERVAYVSTLSKCLSPGL
CCCHHHHHHHHHHHHHHCEEEEECCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHCCCC
RTAYVVMPGGPETQEAMLSALRAFSLMAAPLSMALAMQWIQDGSATELLAGIRAEAAARQ
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AIARQWLPGSGALSPAGIHLWHALPSYWSAARFSRAALDEQLRVTPSDAFHEGPTPPNMI
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHCCCCCCCCCEE
RISLGGAAQRTQLSMALKRLADLLARKPLDQAAAVV
EEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]