Click here to switch to the map view.

The map label for this gene is ytbD [H]

Identifier: 73538402

GI number: 73538402

Start: 1254863

End: 1256107

Strand: Direct

Name: ytbD [H]

Synonym: Reut_B4575

Alternate gene names: 73538402

Gene position: 1254863-1256107 (Clockwise)

Preceding gene: 73538400

Following gene: 73538407

Centisome position: 46.03

GC content: 67.71

Gene sequence:

>1245_bases
ATGACGGCTCCGCACGGAACCCCCGACTCGCTTTCTCTTTCCGCCTCCACCACCGACAACCCAGCCTCTACGGCACATAG
CCGCCGCGCCTTGCTCGCGCTCGGCGTGGGCAGCTTTGGCATCGGCACTGGCGAATTCGTCATCATGGGCCTGTTGCCCG
ACGCCGCGCGCGACCTTGCCATCACGATCCCGCAAGCCGGGCACCTGATCAGCGCCTATGCGCTGGGCGTGGTCATCGGC
GCGCCGCTGCTGGCTGTGCTCGGCGCGCGCTTGCCGCGGCGCAATCTGCTGATCGCGCTGATGGCGGCCTTTGCCATCGG
CAATTTCGCCAGCGCATTTGCGCCCTCCTACGCTTCCATGCTCATCGCGCGGCTGCTGACCGGCTTTCCGCATGGCACCT
ACTTCGGCGTGGCGGCACTGGTGGCGGCGGGACTGGTGCCCCGCGAACGTCGCGGACAGGCGGTGGGCCTGGTCATGCTA
GGGCTGACTGTCGCCACGCTGGTTGGCGTGCCGATTGCCGCTACGGTCGGCACCTGGCTTGGCTGGCGCGCCGCCTTCAT
GATCGTCGGCGCAATCGGTGCGCTGACGGCATGGCTGGTGTGGTGCTGGGTCCCGTTCTTCCCGGCCGATCGCAAGGCGA
GCCCGCTGCGCGAGCTGACTGCACTGCGCCGCAAGCAGGTGTGGCTGACGCTCGGAATTGGCGCGATCGGCTTTGGCGGC
ATGTTCGCGGTGTTCAGCTATATCAAACCCGCCATGCTTGAAGTGGCGCAAATGCCGGCGAGCGCGATTCCGTTTGTGCT
CGCACTGTTCGGTATGGGCATGGTCACCGGGAACCTTGTCGGCGCGAAGCTCGCCGACAAGGCCCTGATGCCAGCCATCG
GCGGCGTGCTGGTGTGGTCGGCACTGGTGATTGGGGCGTTCACGCTGACCGCGCCGCATGCGTGGCTGGCCGCGGTCAAC
GTGCTGCTGATCGGGACCGTCGTCGCGCTCGGACCGGCGCTGCAGATCCGCCTGATGGACGTAGCGGGCGATGCCCAGAC
ACTGGCCGCCGCGCTCAATCACTCGGCCTTCAATATGGCGAATGCCCTGGGTGCATGGCTGGGCGGCGTGAGCATTGCCG
CCGGGCTGGGCTGGACGTCGACCGGATGGGTCGGCGCCCTGCTCGCTGTGGGCGGACTTATCGTGTTTGCGTGGTCCGCG
CTGGCCATGCAGCGCGGTGGCGTCACCATGCCGCAGGCGTCCTGA

Upstream 100 bases:

>100_bases
CGCGCTGCGCCGGAGCGCGCTGGCAACCGATGAGGCGGGACGCAGATGCCCGCCCGCCAGCGAGCAGCGACTGGACAACA
ACCCCTCGCGCTCTCACCCC

Downstream 100 bases:

>100_bases
TCGCTCAGTCCTTCGCCCGCGCCCGCTCGATCGTCATTTGCGTCGGCATCATATTGGTGTCGGCGTTATGCATGACCCAC
AGCGAGCCGGCGATGACGAT

Product: putative transport transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MTAPHGTPDSLSLSASTTDNPASTAHSRRALLALGVGSFGIGTGEFVIMGLLPDAARDLAITIPQAGHLISAYALGVVIG
APLLAVLGARLPRRNLLIALMAAFAIGNFASAFAPSYASMLIARLLTGFPHGTYFGVAALVAAGLVPRERRGQAVGLVML
GLTVATLVGVPIAATVGTWLGWRAAFMIVGAIGALTAWLVWCWVPFFPADRKASPLRELTALRRKQVWLTLGIGAIGFGG
MFAVFSYIKPAMLEVAQMPASAIPFVLALFGMGMVTGNLVGAKLADKALMPAIGGVLVWSALVIGAFTLTAPHAWLAAVN
VLLIGTVVALGPALQIRLMDVAGDAQTLAAALNHSAFNMANALGAWLGGVSIAAGLGWTSTGWVGALLAVGGLIVFAWSA
LAMQRGGVTMPQAS

Sequences:

>Translated_414_residues
MTAPHGTPDSLSLSASTTDNPASTAHSRRALLALGVGSFGIGTGEFVIMGLLPDAARDLAITIPQAGHLISAYALGVVIG
APLLAVLGARLPRRNLLIALMAAFAIGNFASAFAPSYASMLIARLLTGFPHGTYFGVAALVAAGLVPRERRGQAVGLVML
GLTVATLVGVPIAATVGTWLGWRAAFMIVGAIGALTAWLVWCWVPFFPADRKASPLRELTALRRKQVWLTLGIGAIGFGG
MFAVFSYIKPAMLEVAQMPASAIPFVLALFGMGMVTGNLVGAKLADKALMPAIGGVLVWSALVIGAFTLTAPHAWLAAVN
VLLIGTVVALGPALQIRLMDVAGDAQTLAAALNHSAFNMANALGAWLGGVSIAAGLGWTSTGWVGALLAVGGLIVFAWSA
LAMQRGGVTMPQAS
>Mature_413_residues
TAPHGTPDSLSLSASTTDNPASTAHSRRALLALGVGSFGIGTGEFVIMGLLPDAARDLAITIPQAGHLISAYALGVVIGA
PLLAVLGARLPRRNLLIALMAAFAIGNFASAFAPSYASMLIARLLTGFPHGTYFGVAALVAAGLVPRERRGQAVGLVMLG
LTVATLVGVPIAATVGTWLGWRAAFMIVGAIGALTAWLVWCWVPFFPADRKASPLRELTALRRKQVWLTLGIGAIGFGGM
FAVFSYIKPAMLEVAQMPASAIPFVLALFGMGMVTGNLVGAKLADKALMPAIGGVLVWSALVIGAFTLTAPHAWLAAVNV
LLIGTVVALGPALQIRLMDVAGDAQTLAAALNHSAFNMANALGAWLGGVSIAAGLGWTSTGWVGALLAVGGLIVFAWSAL
AMQRGGVTMPQAS

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=360, Percent_Identity=39.4444444444444, Blast_Score=218, Evalue=5e-58,
Organism=Escherichia coli, GI1786595, Length=365, Percent_Identity=33.4246575342466, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1787808, Length=403, Percent_Identity=25.8064516129032, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI145693198, Length=344, Percent_Identity=24.1279069767442, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082231, Length=145, Percent_Identity=31.7241379310345, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42335; Mature: 42204

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPHGTPDSLSLSASTTDNPASTAHSRRALLALGVGSFGIGTGEFVIMGLLPDAARDLA
CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHEEEECCCCCCCCCCEEEEECCCCCCCCEE
ITIPQAGHLISAYALGVVIGAPLLAVLGARLPRRNLLIALMAAFAIGNFASAFAPSYASM
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIARLLTGFPHGTYFGVAALVAAGLVPRERRGQAVGLVMLGLTVATLVGVPIAATVGTWL
HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
GWRAAFMIVGAIGALTAWLVWCWVPFFPADRKASPLRELTALRRKQVWLTLGIGAIGFGG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEECCHHHHHHH
MFAVFSYIKPAMLEVAQMPASAIPFVLALFGMGMVTGNLVGAKLADKALMPAIGGVLVWS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVIGAFTLTAPHAWLAAVNVLLIGTVVALGPALQIRLMDVAGDAQTLAAALNHSAFNMA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHHHHHHHHH
NALGAWLGGVSIAAGLGWTSTGWVGALLAVGGLIVFAWSALAMQRGGVTMPQAS
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TAPHGTPDSLSLSASTTDNPASTAHSRRALLALGVGSFGIGTGEFVIMGLLPDAARDLA
CCCCCCCCCEEEECCCCCCCHHHHHHHHHHEEEECCCCCCCCCCEEEEECCCCCCCCEE
ITIPQAGHLISAYALGVVIGAPLLAVLGARLPRRNLLIALMAAFAIGNFASAFAPSYASM
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIARLLTGFPHGTYFGVAALVAAGLVPRERRGQAVGLVMLGLTVATLVGVPIAATVGTWL
HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
GWRAAFMIVGAIGALTAWLVWCWVPFFPADRKASPLRELTALRRKQVWLTLGIGAIGFGG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEECCHHHHHHH
MFAVFSYIKPAMLEVAQMPASAIPFVLALFGMGMVTGNLVGAKLADKALMPAIGGVLVWS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVIGAFTLTAPHAWLAAVNVLLIGTVVALGPALQIRLMDVAGDAQTLAAALNHSAFNMA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHHHHHHHHH
NALGAWLGGVSIAAGLGWTSTGWVGALLAVGGLIVFAWSALAMQRGGVTMPQAS
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]