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The map label for this gene is ybcM [C]

Identifier: 73538400

GI number: 73538400

Start: 1253202

End: 1254230

Strand: Direct

Name: ybcM [C]

Synonym: Reut_B4573

Alternate gene names: 73538400

Gene position: 1253202-1254230 (Clockwise)

Preceding gene: 73538393

Following gene: 73538402

Centisome position: 45.97

GC content: 64.43

Gene sequence:

>1029_bases
ATGACTTCGAATTCGCAGGCTTCTCGCCATAACACCGCCAGCGTGCAACTGCTGCTCCAATTCGGTCTCGACCACGGCCT
TTCCGGAGACCGTTGCCTTGCGCGCACCGGGCTCGACTGGCGACGCCTGGCCGAACCTGGCTTCGCCATCGACGCGAGGC
AGGAACTCGAGCTGATCCGCAACCTCGTGAACGCGCTCGGGCATCTTCCCGGGCTTGGCATACAGGCCGGGTTGCGCTAC
CGGCTGGCCAACTACGGCATCTGGGGCTTCGCGCTGCTGAGTTGTCCCACACTGCGCAGTGCCATTCACATGGCAGTCCG
TTTCCTTGAGCTTTCGTATCCGCTATCCGAGATCAATGAGGCATTCGAGGGCGACCGCGTCGTTACCACCATCGACGACA
GTGGGCTACCCGAAGACGTGCGCGATTTCATCGTCGACCGCGACATAGCCAGTTCCGTCAGTTTCGTTCGCGACCTGATC
GGCACAGCGCTGCCGGTGGAAAGCGTGACGCTGCGTCGACCCGAACCCGCCGATGCGAGTCCCTGGCAGGTGCTGTTCGG
ATGCTCGCCCGTGTTCGGCGCAGACAAGAATCGCGTCGTCAAGAACGCGGCGGACTATCTCGACCGGCCGCTGCCGGGCG
CAAGCGCGGAAGTCGCGCGCCAGTGCGAGTTGCAATGCGAGGCGCTGCTGGCAAGCCGACGTGCCCGCAGCGGCTTCGCC
GGACAGGTCCGCGCACGGCTGGTGGCGAAGCCTGGCTCGCTGCCCGGTGCCGAGGCACTTGCTGCGGACCTGAACATGAC
TTCACGCACGTTGCATCGGCGCCTCGCGGGCGAAGGCACCAGTGTCCGCCAGTTGCAGGAGGAAGTACGCGAATCCCTCG
CCGACGAACTGCTGGCGAGCGGCCTCCCGCTGACGCAGGTTGGCGAGGCGCTCGGGTATGGAGAGGTATCGAACTTCATT
CGCGCCTATCGTCGCTGGAAGGGTTCGACGCCTCACCAGCATCGCAAGGTTTTGAGCGATCGACGCTGA

Upstream 100 bases:

>100_bases
CCATGGCATATTTAGACAGAAAATAATCATTTTCAGACAGCCACGGGATGTTCCCATGTGATCCCGTTGACTGCCGGGCT
ATTGCCGACTTACCAGATTG

Downstream 100 bases:

>100_bases
GCAGCTTCGGGGCCGGGAAGCCATAGAACGCCGGCCGTTTCCCCTGGAAAAATGGGGTGCGGAAATACGACGGCGCCCCG
CTGCCGGGGCGCCGCTGGAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTSNSQASRHNTASVQLLLQFGLDHGLSGDRCLARTGLDWRRLAEPGFAIDARQELELIRNLVNALGHLPGLGIQAGLRY
RLANYGIWGFALLSCPTLRSAIHMAVRFLELSYPLSEINEAFEGDRVVTTIDDSGLPEDVRDFIVDRDIASSVSFVRDLI
GTALPVESVTLRRPEPADASPWQVLFGCSPVFGADKNRVVKNAADYLDRPLPGASAEVARQCELQCEALLASRRARSGFA
GQVRARLVAKPGSLPGAEALAADLNMTSRTLHRRLAGEGTSVRQLQEEVRESLADELLASGLPLTQVGEALGYGEVSNFI
RAYRRWKGSTPHQHRKVLSDRR

Sequences:

>Translated_342_residues
MTSNSQASRHNTASVQLLLQFGLDHGLSGDRCLARTGLDWRRLAEPGFAIDARQELELIRNLVNALGHLPGLGIQAGLRY
RLANYGIWGFALLSCPTLRSAIHMAVRFLELSYPLSEINEAFEGDRVVTTIDDSGLPEDVRDFIVDRDIASSVSFVRDLI
GTALPVESVTLRRPEPADASPWQVLFGCSPVFGADKNRVVKNAADYLDRPLPGASAEVARQCELQCEALLASRRARSGFA
GQVRARLVAKPGSLPGAEALAADLNMTSRTLHRRLAGEGTSVRQLQEEVRESLADELLASGLPLTQVGEALGYGEVSNFI
RAYRRWKGSTPHQHRKVLSDRR
>Mature_341_residues
TSNSQASRHNTASVQLLLQFGLDHGLSGDRCLARTGLDWRRLAEPGFAIDARQELELIRNLVNALGHLPGLGIQAGLRYR
LANYGIWGFALLSCPTLRSAIHMAVRFLELSYPLSEINEAFEGDRVVTTIDDSGLPEDVRDFIVDRDIASSVSFVRDLIG
TALPVESVTLRRPEPADASPWQVLFGCSPVFGADKNRVVKNAADYLDRPLPGASAEVARQCELQCEALLASRRARSGFAG
QVRARLVAKPGSLPGAEALAADLNMTSRTLHRRLAGEGTSVRQLQEEVRESLADELLASGLPLTQVGEALGYGEVSNFIR
AYRRWKGSTPHQHRKVLSDRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37447; Mature: 37316

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNSQASRHNTASVQLLLQFGLDHGLSGDRCLARTGLDWRRLAEPGFAIDARQELELIR
CCCCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHCCCCCCCCCHHHHHHHH
NLVNALGHLPGLGIQAGLRYRLANYGIWGFALLSCPTLRSAIHMAVRFLELSYPLSEINE
HHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AFEGDRVVTTIDDSGLPEDVRDFIVDRDIASSVSFVRDLIGTALPVESVTLRRPEPADAS
HHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCC
PWQVLFGCSPVFGADKNRVVKNAADYLDRPLPGASAEVARQCELQCEALLASRRARSGFA
CCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
GQVRARLVAKPGSLPGAEALAADLNMTSRTLHRRLAGEGTSVRQLQEEVRESLADELLAS
HHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
GLPLTQVGEALGYGEVSNFIRAYRRWKGSTPHQHRKVLSDRR
CCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TSNSQASRHNTASVQLLLQFGLDHGLSGDRCLARTGLDWRRLAEPGFAIDARQELELIR
CCCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHCCCCCCCCCHHHHHHHH
NLVNALGHLPGLGIQAGLRYRLANYGIWGFALLSCPTLRSAIHMAVRFLELSYPLSEINE
HHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AFEGDRVVTTIDDSGLPEDVRDFIVDRDIASSVSFVRDLIGTALPVESVTLRRPEPADAS
HHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCC
PWQVLFGCSPVFGADKNRVVKNAADYLDRPLPGASAEVARQCELQCEALLASRRARSGFA
CCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
GQVRARLVAKPGSLPGAEALAADLNMTSRTLHRRLAGEGTSVRQLQEEVRESLADELLAS
HHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
GLPLTQVGEALGYGEVSNFIRAYRRWKGSTPHQHRKVLSDRR
CCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430 [H]