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The map label for this gene is yfdE [H]

Identifier: 73538248

GI number: 73538248

Start: 1077998

End: 1079107

Strand: Direct

Name: yfdE [H]

Synonym: Reut_B4420

Alternate gene names: 73538248

Gene position: 1077998-1079107 (Clockwise)

Preceding gene: 73538247

Following gene: 73538253

Centisome position: 39.54

GC content: 67.03

Gene sequence:

>1110_bases
ATGAATTCGTCAGAACTCTCCTTCGCCCCGCTGAGCGGGATCCGCGTGCTCGACTTCTCGCACGTCATCGCAGGGCCGCT
GGCCACGTTCTACCTCGCGCAACTCGGCGCCACGGTATTGAAGATGGAAAACGCAAACGGTGGCGACGTGATGCGTCGCA
CCGAGAAAGGCCGGCAGGGCTTCGTCGCGCTGAACGCCGGCAAGCAAAGCCATGCGGTAGACCTTGGCAACGCGGCAGAC
CTGGCCCGCGCGCTGGAGATGGCGGCAACCTGCGACGTCGTCGTCGACAACCTGCGCCCCGGCGTGCTCGAGCGCTTCGG
GCTTGGCTTCGAGGCGATCCGCGCGGTCAACCCGAAAGTCGTGTACTGCACGATCTCGGGCTATGGCCAGCACAGCGGCG
ACGTCACCGGCCGGCCGGCGTACGACCACGTGATCCAGGCCGCCACTGGCATGGCCTTCATGGCAGGCACCGAAGACGAC
CCGCCGATCAAGACCGGCTTTCCGGTCGTCGATGCCGCGACGGGCATGCAGGCCGCGCTGGCGATCCTGGCCGGGCTGCG
CGAGCGGGACCGGCTTGGCTGCGCCGTGCAGCTCGATGTGTCCATGACAGGTGCCGCGCTGCAGCTGATGTACTCGTTCG
CGTGCGAGGCGTTGACCAGCGGCACGACGCCGCCGCGCGTCGGCAACCAGGGCTATTCCGGCAGCCCGACTGCCGACTTC
TTTGCCACCGAGGATGGCTGGATCGCGCTCGGCGCCAATACGCCGCGCCAGTTGATGCGGCTATTGGAAGTGCTCGACCT
GTCGCACCTCGCGTCCGATCCGGCTTACTTTGCCGAGCCACTGGACCCGGACACGCCGGTATCGTTCGTACGCTCCGTCG
ATCCCGCGCGGCTCAAGGCCGTGATCGCCGACCGCGTCAGGACGCTTGGGGCGGAAGACCTCGAACACCATCTCGGCCCG
CGCGGCGTGCCAGCCGCCAAAGTGCGCAAGCTTGGCGAGTTCGCCACGGAAGCGCAGCGGCATGGACGCGTATCGACCGT
CATGCTGAAGGACGAAGACGCTTCGGTGATCTCTCCGGGGCTTGGCTTCAGGGTGCGGACGCATCGCTGA

Upstream 100 bases:

>100_bases
ACGCCAAGCCCCGAAGCGTTCGACCGCTTCATCACCGACGAGACGGACAAATATCGTCGCATCGTCAAACAGAGTCATAT
TGCGTTGCAGTGAGGCCGAC

Downstream 100 bases:

>100_bases
ACGCGCCTTTCGCAACGTGGCAGGGCCGAGGCGGTCGTCCGGACCGCCTCAGCGCGGTATGGCCGCGTAGATCGCCCGGA
TTGCCGCAATGAGCGCCGTT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MNSSELSFAPLSGIRVLDFSHVIAGPLATFYLAQLGATVLKMENANGGDVMRRTEKGRQGFVALNAGKQSHAVDLGNAAD
LARALEMAATCDVVVDNLRPGVLERFGLGFEAIRAVNPKVVYCTISGYGQHSGDVTGRPAYDHVIQAATGMAFMAGTEDD
PPIKTGFPVVDAATGMQAALAILAGLRERDRLGCAVQLDVSMTGAALQLMYSFACEALTSGTTPPRVGNQGYSGSPTADF
FATEDGWIALGANTPRQLMRLLEVLDLSHLASDPAYFAEPLDPDTPVSFVRSVDPARLKAVIADRVRTLGAEDLEHHLGP
RGVPAAKVRKLGEFATEAQRHGRVSTVMLKDEDASVISPGLGFRVRTHR

Sequences:

>Translated_369_residues
MNSSELSFAPLSGIRVLDFSHVIAGPLATFYLAQLGATVLKMENANGGDVMRRTEKGRQGFVALNAGKQSHAVDLGNAAD
LARALEMAATCDVVVDNLRPGVLERFGLGFEAIRAVNPKVVYCTISGYGQHSGDVTGRPAYDHVIQAATGMAFMAGTEDD
PPIKTGFPVVDAATGMQAALAILAGLRERDRLGCAVQLDVSMTGAALQLMYSFACEALTSGTTPPRVGNQGYSGSPTADF
FATEDGWIALGANTPRQLMRLLEVLDLSHLASDPAYFAEPLDPDTPVSFVRSVDPARLKAVIADRVRTLGAEDLEHHLGP
RGVPAAKVRKLGEFATEAQRHGRVSTVMLKDEDASVISPGLGFRVRTHR
>Mature_369_residues
MNSSELSFAPLSGIRVLDFSHVIAGPLATFYLAQLGATVLKMENANGGDVMRRTEKGRQGFVALNAGKQSHAVDLGNAAD
LARALEMAATCDVVVDNLRPGVLERFGLGFEAIRAVNPKVVYCTISGYGQHSGDVTGRPAYDHVIQAATGMAFMAGTEDD
PPIKTGFPVVDAATGMQAALAILAGLRERDRLGCAVQLDVSMTGAALQLMYSFACEALTSGTTPPRVGNQGYSGSPTADF
FATEDGWIALGANTPRQLMRLLEVLDLSHLASDPAYFAEPLDPDTPVSFVRSVDPARLKAVIADRVRTLGAEDLEHHLGP
RGVPAAKVRKLGEFATEAQRHGRVSTVMLKDEDASVISPGLGFRVRTHR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863124, Length=339, Percent_Identity=29.7935103244838, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI300863128, Length=338, Percent_Identity=29.8816568047337, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI300863126, Length=275, Percent_Identity=30.1818181818182, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI13376042, Length=338, Percent_Identity=25.1479289940828, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI42794625, Length=261, Percent_Identity=28.3524904214559, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI266456254, Length=262, Percent_Identity=29.0076335877863, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI266458397, Length=256, Percent_Identity=29.6875, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI266458393, Length=250, Percent_Identity=29.2, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI87082093, Length=369, Percent_Identity=28.4552845528455, Blast_Score=161, Evalue=7e-41,
Organism=Escherichia coli, GI1788717, Length=205, Percent_Identity=33.6585365853659, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1786222, Length=272, Percent_Identity=27.2058823529412, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=289, Percent_Identity=28.3737024221453, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=288, Percent_Identity=27.4305555555556, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24648431, Length=274, Percent_Identity=37.2262773722628, Blast_Score=172, Evalue=4e-43,
Organism=Drosophila melanogaster, GI24585488, Length=275, Percent_Identity=30.5454545454545, Blast_Score=96, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39188; Mature: 39188

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSELSFAPLSGIRVLDFSHVIAGPLATFYLAQLGATVLKMENANGGDVMRRTEKGRQG
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCC
FVALNAGKQSHAVDLGNAADLARALEMAATCDVVVDNLRPGVLERFGLGFEAIRAVNPKV
EEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCEE
VYCTISGYGQHSGDVTGRPAYDHVIQAATGMAFMAGTEDDPPIKTGFPVVDAATGMQAAL
EEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
AILAGLRERDRLGCAVQLDVSMTGAALQLMYSFACEALTSGTTPPRVGNQGYSGSPTADF
HHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
FATEDGWIALGANTPRQLMRLLEVLDLSHLASDPAYFAEPLDPDTPVSFVRSVDPARLKA
EECCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHCCCHHHHHH
VIADRVRTLGAEDLEHHLGPRGVPAAKVRKLGEFATEAQRHGRVSTVMLKDEDASVISPG
HHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCC
LGFRVRTHR
CCEEEECCC
>Mature Secondary Structure
MNSSELSFAPLSGIRVLDFSHVIAGPLATFYLAQLGATVLKMENANGGDVMRRTEKGRQG
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCC
FVALNAGKQSHAVDLGNAADLARALEMAATCDVVVDNLRPGVLERFGLGFEAIRAVNPKV
EEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCEE
VYCTISGYGQHSGDVTGRPAYDHVIQAATGMAFMAGTEDDPPIKTGFPVVDAATGMQAAL
EEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
AILAGLRERDRLGCAVQLDVSMTGAALQLMYSFACEALTSGTTPPRVGNQGYSGSPTADF
HHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
FATEDGWIALGANTPRQLMRLLEVLDLSHLASDPAYFAEPLDPDTPVSFVRSVDPARLKA
EECCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHCCCHHHHHH
VIADRVRTLGAEDLEHHLGPRGVPAAKVRKLGEFATEAQRHGRVSTVMLKDEDASVISPG
HHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCC
LGFRVRTHR
CCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]