The gene/protein map for NC_007348 is currently unavailable.
Definition Ralstonia eutropha JMP134 chromosome chromosome 2, complete sequence.
Accession NC_007348
Length 2,726,152

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The map label for this gene is yhdF [H]

Identifier: 73538205

GI number: 73538205

Start: 1033460

End: 1034317

Strand: Direct

Name: yhdF [H]

Synonym: Reut_B4376

Alternate gene names: 73538205

Gene position: 1033460-1034317 (Clockwise)

Preceding gene: 73538202

Following gene: 73538206

Centisome position: 37.91

GC content: 65.15

Gene sequence:

>858_bases
ATGTCTACGCCCAAAGAGCTGCCGCCGCAGCATCAGGAACGTCAACCCGGTCTGGAAAGCGCCATGCACCCGAAGCCCGA
CAGCGGCGCCGACGACTATGTGGGAAGCGGGCGGCTGAACAACAAGGTCGCGCTGGTGACCGGCGGCGACAGCGGGATCG
GCCGAGCCATCGCCGTGGCCTTCGCGCGCGAGGGTGCCGACGTCGCGATCGCATACCTCGATGAACACAGCGACGCCAGG
GAAACCGTCCGGCTCGTCGAAGACGCCGGCCGCAAGTGCGTCTCGCTTGCCGGTGATCTCGCCGACGTCAGCCATGCCGA
AACTGTCGCGGCGCGCGTGGTCGACGCCTTCGGCCGTCTCGACATCCTGGTCAACAACGCCGCGGAACAGCATCCGCAGC
CGTCGCTTGAAGACGTGGAGGCAGAGCAGGTCGAGGCCACGTTCCGCACCAATGTCTTTGCGATGTTCCACCTCACGCGC
GCGCTCCTGCCTCACTTGCAGAAGGGCGCGGCGATCCTCAATACAACGTCGGTCACCGCCTACCGTGGTAGTGCACATCT
GCTGGATTACTCGGCCACCAAAGGCGCCATTGTCTCGTTCACGCGCTCGCTGGCTCTGCAGGTCGTCAAGCGCGGCATCC
GCGTCAACGGCGTTGCGCCGGGACCGATCTGGACACCGCTGATTCCGTCCACCTTCACGGCCGAGGAAGTTGCCGAGTTC
GGCAAGAAGACGCCCATGGGCCGGCCCGGCCAGCCGTTTGAAGTGGCAGCCGGCTATGTGTTCCTGGCGTCCGACGCGGC
CAGCTATATCACGGGGCAGATCCTGCATATCAATGGCGGCGAGGTGGTGAACGGATAG

Upstream 100 bases:

>100_bases
CTTACGGCCGTTTCGCGGCAGAGGCCGCACACGTACCCACGCCCCCGCGCGGCACGAAACTTGCGCGATCCGACCGGGAC
GACATCCTCAGGAGCCATCC

Downstream 100 bases:

>100_bases
CGGCCGGCACAACCGCCAACGGCCCGGCGGCACGAAGCATCGATTGCAGGAGCAGCATCATGTCACCGATCGTATTCGGG
TGGTTCGACACCATGGCGAA

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSTPKELPPQHQERQPGLESAMHPKPDSGADDYVGSGRLNNKVALVTGGDSGIGRAIAVAFAREGADVAIAYLDEHSDAR
ETVRLVEDAGRKCVSLAGDLADVSHAETVAARVVDAFGRLDILVNNAAEQHPQPSLEDVEAEQVEATFRTNVFAMFHLTR
ALLPHLQKGAAILNTTSVTAYRGSAHLLDYSATKGAIVSFTRSLALQVVKRGIRVNGVAPGPIWTPLIPSTFTAEEVAEF
GKKTPMGRPGQPFEVAAGYVFLASDAASYITGQILHINGGEVVNG

Sequences:

>Translated_285_residues
MSTPKELPPQHQERQPGLESAMHPKPDSGADDYVGSGRLNNKVALVTGGDSGIGRAIAVAFAREGADVAIAYLDEHSDAR
ETVRLVEDAGRKCVSLAGDLADVSHAETVAARVVDAFGRLDILVNNAAEQHPQPSLEDVEAEQVEATFRTNVFAMFHLTR
ALLPHLQKGAAILNTTSVTAYRGSAHLLDYSATKGAIVSFTRSLALQVVKRGIRVNGVAPGPIWTPLIPSTFTAEEVAEF
GKKTPMGRPGQPFEVAAGYVFLASDAASYITGQILHINGGEVVNG
>Mature_284_residues
STPKELPPQHQERQPGLESAMHPKPDSGADDYVGSGRLNNKVALVTGGDSGIGRAIAVAFAREGADVAIAYLDEHSDARE
TVRLVEDAGRKCVSLAGDLADVSHAETVAARVVDAFGRLDILVNNAAEQHPQPSLEDVEAEQVEATFRTNVFAMFHLTRA
LLPHLQKGAAILNTTSVTAYRGSAHLLDYSATKGAIVSFTRSLALQVVKRGIRVNGVAPGPIWTPLIPSTFTAEEVAEFG
KKTPMGRPGQPFEVAAGYVFLASDAASYITGQILHINGGEVVNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=233, Percent_Identity=34.7639484978541, Blast_Score=118, Evalue=5e-27,
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=34.6774193548387, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=29.8449612403101, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI10190704, Length=269, Percent_Identity=30.8550185873606, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=31.8897637795276, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=32.4, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=32.8571428571429, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=32.1052631578947, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=27.8225806451613, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=31.5789473684211, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=34.5360824742268, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=28.4584980237154, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4503301, Length=209, Percent_Identity=28.2296650717703, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=34.6820809248555, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7706318, Length=209, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI310128830, Length=177, Percent_Identity=31.638418079096, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI310115468, Length=177, Percent_Identity=31.638418079096, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI142976729, Length=199, Percent_Identity=29.6482412060301, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=28.2722513089005, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7657478, Length=217, Percent_Identity=27.6497695852535, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1789378, Length=275, Percent_Identity=50.5454545454545, Blast_Score=275, Evalue=2e-75,
Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=37.6984126984127, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=34.0080971659919, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=35.5371900826446, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=32.1138211382114, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=33.0739299610895, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=31.2757201646091, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=31.6, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=28.6290322580645, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=29.7297297297297, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=32.3770491803279, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787526, Length=247, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=29.2307692307692, Blast_Score=73, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=33.8582677165354, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=34, Blast_Score=126, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=32.6923076923077, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=35.0746268656716, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=32.8301886792453, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=31.9230769230769, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=32.824427480916, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=35.0597609561753, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=31.4393939393939, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=33.4677419354839, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=34.375, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=32.7067669172932, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=32.319391634981, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=33.206106870229, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=31.9066147859922, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=32.9588014981273, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=30.7984790874525, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.5660377358491, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=31.9391634980989, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=31.1284046692607, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=30.241935483871, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=29.6442687747036, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=28.996282527881, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=31.3207547169811, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=30.3846153846154, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=32.5490196078431, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=33.0708661417323, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17564282, Length=218, Percent_Identity=29.3577981651376, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17567345, Length=192, Percent_Identity=28.125, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17508651, Length=251, Percent_Identity=28.6852589641434, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=29.0155440414508, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=207, Percent_Identity=28.5024154589372, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=28.4552845528455, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=203, Percent_Identity=29.064039408867, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=29.7979797979798, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=205, Percent_Identity=26.3414634146341, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=252, Percent_Identity=29.3650793650794, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=27.8350515463918, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=37.3540856031128, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=35.6, Blast_Score=124, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=34.6938775510204, Blast_Score=124, Evalue=7e-29,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=34.2741935483871, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24639444, Length=259, Percent_Identity=34.3629343629344, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=38.0952380952381, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32.8, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=31.9838056680162, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24580925, Length=238, Percent_Identity=29.4117647058824, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=32.824427480916, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281364892, Length=169, Percent_Identity=28.9940828402367, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24581726, Length=169, Percent_Identity=31.3609467455621, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221510726, Length=191, Percent_Identity=34.5549738219895, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=32.3699421965318, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21358495, Length=205, Percent_Identity=30.2439024390244, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=27.6041666666667, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=28.4974093264249, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=27.6041666666667, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007236, Length=221, Percent_Identity=29.8642533936652, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30174; Mature: 30043

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS00061 ADH_SHORT ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSTPKELPPQHQERQPGLESAMHPKPDSGADDYVGSGRLNNKVALVTGGDSGIGRAIAVA
CCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
FAREGADVAIAYLDEHSDARETVRLVEDAGRKCVSLAGDLADVSHAETVAARVVDAFGRL
HHHCCCCEEEEEECCCCCHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCE
DILVNNAAEQHPQPSLEDVEAEQVEATFRTNVFAMFHLTRALLPHLQKGAAILNTTSVTA
EEEECCHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEE
YRGSAHLLDYSATKGAIVSFTRSLALQVVKRGIRVNGVAPGPIWTPLIPSTFTAEEVAEF
ECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHH
GKKTPMGRPGQPFEVAAGYVFLASDAASYITGQILHINGGEVVNG
HHCCCCCCCCCCHHHHCCEEEEECCHHHHHEEEEEEECCCCCCCC
>Mature Secondary Structure 
STPKELPPQHQERQPGLESAMHPKPDSGADDYVGSGRLNNKVALVTGGDSGIGRAIAVA
CCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
FAREGADVAIAYLDEHSDARETVRLVEDAGRKCVSLAGDLADVSHAETVAARVVDAFGRL
HHHCCCCEEEEEECCCCCHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCE
DILVNNAAEQHPQPSLEDVEAEQVEATFRTNVFAMFHLTRALLPHLQKGAAILNTTSVTA
EEEECCHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEE
YRGSAHLLDYSATKGAIVSFTRSLALQVVKRGIRVNGVAPGPIWTPLIPSTFTAEEVAEF
ECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHH
GKKTPMGRPGQPFEVAAGYVFLASDAASYITGQILHINGGEVVNG
HHCCCCCCCCCCHHHHCCEEEEECCHHHHHEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]