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The map label for this gene is gylR [H]

Identifier: 73538046

GI number: 73538046

Start: 856177

End: 856971

Strand: Reverse

Name: gylR [H]

Synonym: Reut_B4216

Alternate gene names: 73538046

Gene position: 856971-856177 (Counterclockwise)

Preceding gene: 73538051

Following gene: 73538045

Centisome position: 31.44

GC content: 69.94

Gene sequence:

>795_bases
ATGGCGGCAGCGGGGCGCAAGACGGCGCAGGCGGAAGGCGAGGAAAAGGTGCAGCGCGGCATCCAGAGCGTGGAGGTCGC
CGGCCGCTTCCTGGGCGCGCTGGCCGCCGGGCGCGCGCCGATGACGCTGGCCTCACTCGCGGACGCCGCACAGCTAGCGC
CTGCCCAGGCCCATGCCTATCTGGTCAGCCTGACGCGGCTCGGGCTAATCAAGCGCGATCATCTGTCGGGCCGCTACGAA
CCGGGTCCGCTTTCGCTGCAGTTGGGCATGCTGCATCTCGATTCCGACGCTGCCTACCGCGCCGCCGTGCCACGCGTGGA
TGAACTGGCCGAGGCGACCGGCTTCAGCGTGGCGATCAGCATCGCCGGCCCGCACGGGCCCGCCATCGTGCGCTATGTGC
CGGCCGCGGCGCCGCTCCATGTCAACCTGCACGTCGGCACCGTGATGGCGCTGGCCGCGACGGCGACGGGACGCGTGTAT
TGCGCATTCGAGCCGCGCACGCGCTGGGACGCGATATGGCGACAGCAGCAACCGCATGCCACAGCGGCCGATGCGGCAGC
GTTCGACGACAGGCTGCAGGCAATCCACGCACGCGGCATGGAGCGCAGCATCGACACGCCAAGCCCGGCCGTGAGCAGCC
TCAGCGTACCGGTGCTCGATACGGATGGCGCATTGCGGCTGGTGCTGACCGTGGTGGGATCGACGGGCGCCATCGACGTC
GACTGGCAAGGACCGGTGGCAAAGGCGCTGCGGGCCACTGCCAGGGCCATCAGCGCAGACCTTGGACAAGCATGA

Upstream 100 bases:

>100_bases
GTTAATTTACGGGGCGGATGGAAAATGCGCGGGTAAACACCGATGCCGGGAGCCGGTGCCGGTGACGTTCGATTAATATC
TGGGGTTTCCGGAGAGGACG

Downstream 100 bases:

>100_bases
CGACGCAAGCCGCCCCGAACGATGACAAAGCCGCTGACGGCGGCAAGCCCCAACGCGGCATCCAGTCGCTCGACAGTACC
GGCCAATTGCTGGCGGCGCT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MAAAGRKTAQAEGEEKVQRGIQSVEVAGRFLGALAAGRAPMTLASLADAAQLAPAQAHAYLVSLTRLGLIKRDHLSGRYE
PGPLSLQLGMLHLDSDAAYRAAVPRVDELAEATGFSVAISIAGPHGPAIVRYVPAAAPLHVNLHVGTVMALAATATGRVY
CAFEPRTRWDAIWRQQQPHATAADAAAFDDRLQAIHARGMERSIDTPSPAVSSLSVPVLDTDGALRLVLTVVGSTGAIDV
DWQGPVAKALRATARAISADLGQA

Sequences:

>Translated_264_residues
MAAAGRKTAQAEGEEKVQRGIQSVEVAGRFLGALAAGRAPMTLASLADAAQLAPAQAHAYLVSLTRLGLIKRDHLSGRYE
PGPLSLQLGMLHLDSDAAYRAAVPRVDELAEATGFSVAISIAGPHGPAIVRYVPAAAPLHVNLHVGTVMALAATATGRVY
CAFEPRTRWDAIWRQQQPHATAADAAAFDDRLQAIHARGMERSIDTPSPAVSSLSVPVLDTDGALRLVLTVVGSTGAIDV
DWQGPVAKALRATARAISADLGQA
>Mature_263_residues
AAAGRKTAQAEGEEKVQRGIQSVEVAGRFLGALAAGRAPMTLASLADAAQLAPAQAHAYLVSLTRLGLIKRDHLSGRYEP
GPLSLQLGMLHLDSDAAYRAAVPRVDELAEATGFSVAISIAGPHGPAIVRYVPAAAPLHVNLHVGTVMALAATATGRVYC
AFEPRTRWDAIWRQQQPHATAADAAAFDDRLQAIHARGMERSIDTPSPAVSSLSVPVLDTDGALRLVLTVVGSTGAIDVD
WQGPVAKALRATARAISADLGQA

Specific function: May be an activator protein for the gylABX operon [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1789999, Length=257, Percent_Identity=25.6809338521401, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27498; Mature: 27366

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAGRKTAQAEGEEKVQRGIQSVEVAGRFLGALAAGRAPMTLASLADAAQLAPAQAHAY
CCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHH
LVSLTRLGLIKRDHLSGRYEPGPLSLQLGMLHLDSDAAYRAAVPRVDELAEATGFSVAIS
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCHHHHHCCCHHHHHHHCCCEEEEE
IAGPHGPAIVRYVPAAAPLHVNLHVGTVMALAATATGRVYCAFEPRTRWDAIWRQQQPHA
EECCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCC
TAADAAAFDDRLQAIHARGMERSIDTPSPAVSSLSVPVLDTDGALRLVLTVVGSTGAIDV
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCCCHHEEEEEECCCCCEEEE
DWQGPVAKALRATARAISADLGQA
CCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AAAGRKTAQAEGEEKVQRGIQSVEVAGRFLGALAAGRAPMTLASLADAAQLAPAQAHAY
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHH
LVSLTRLGLIKRDHLSGRYEPGPLSLQLGMLHLDSDAAYRAAVPRVDELAEATGFSVAIS
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCHHHHHCCCHHHHHHHCCCEEEEE
IAGPHGPAIVRYVPAAAPLHVNLHVGTVMALAATATGRVYCAFEPRTRWDAIWRQQQPHA
EECCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCC
TAADAAAFDDRLQAIHARGMERSIDTPSPAVSSLSVPVLDTDGALRLVLTVVGSTGAIDV
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCCCHHEEEEEECCCCCEEEE
DWQGPVAKALRATARAISADLGQA
CCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3225846; 12000953 [H]