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The map label for this gene is ydhJ [H]

Identifier: 73537929

GI number: 73537929

Start: 741611

End: 742423

Strand: Reverse

Name: ydhJ [H]

Synonym: Reut_B4096

Alternate gene names: 73537929

Gene position: 742423-741611 (Counterclockwise)

Preceding gene: 73537930

Following gene: 73537923

Centisome position: 27.23

GC content: 68.51

Gene sequence:

>813_bases
ATGAATCGAAAGCTTTCCCTTTTTGTCCCCGTCGCTGTCACGCTGATCGCCGTGGGTGCGGCGGCACTGACGGCGTGGCA
TCTGTGGCAGTACTACACCGGCGCACCGTGGACGCGAGACGGCCGGGTCCGTGCGGAGGTAGTACAGGTTGCACCCGACG
TATCGGGGCTCGTCGCGCAAGTCCTTGTTGCCGACAATGCGCACGTGAAGCGCGGCCAGCTGCTGTTCGTGGTGGACGAA
GCGCGCTTTCGCGTGGCCCTGAAACAGGCGCAGGGCGCGGCCAACGCCGCACGTGCAGCGTTGGTGCGCGCCGGCAAGGT
GGACATGGCCACCGCACAGGCGCGCCTCGACCAGGCAGACGCTGCAGTGGAAGCGGCCAGCCTCGACCTGGCGCGCTGCC
GCGTGGCCAGCCCGGTCGACGGCCACGTCGCGGACCATCTGCCGCGCGCCGGCGACTTCGTGAATCGTGGCCGGCCCGCG
CTCTCGGTGGTCGCCAGCAGGTCGCAGTACGTCGAAGGCTATTTCGAGGAAACCAAGCTGCCCGCAATCCGCGTCGGCGC
CGCGGCCGACGTACGGATCATGGGCCAGAGCACGGCGCTGCGCGGGCATGTCGTCAGCATCGCCCCGGGCATCGACGACC
AGGACCGCAGCAGCGGGCCGAACCTGTTGCCGACCGTCAACCCGACGTTCAATTGGGTACGCCTTGCCCAACGTATCCCG
GTCCGCGTTGCGCTCGACGAGGTGCCGCCCGGCATGCATCTGGTCGCCGGCCAGACGGCCACGATCCGGGTAAGAAGCGC
GTCGCATGACTGA

Upstream 100 bases:

>100_bases
TCGGCTTCTACCGCTTCGTGTGGCACCGGTCGCTGTTTAACTTCTCCCTCTACATCCTCGTACTGGGCGCGCTGGTCGCG
CTCGTCTGGGAGGTCCCATC

Downstream 100 bases:

>100_bases
AAGCAAGCGGCAATGCCGTGTGGAGCCGTTGCCCTTGCAGAAGACTGAACGGGATTCAGAAAGGATCGGGAAACAGCTGC
GCGGCAAGCGCCGCGCCTTC

Product: secretion protein HlyD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MNRKLSLFVPVAVTLIAVGAAALTAWHLWQYYTGAPWTRDGRVRAEVVQVAPDVSGLVAQVLVADNAHVKRGQLLFVVDE
ARFRVALKQAQGAANAARAALVRAGKVDMATAQARLDQADAAVEAASLDLARCRVASPVDGHVADHLPRAGDFVNRGRPA
LSVVASRSQYVEGYFEETKLPAIRVGAAADVRIMGQSTALRGHVVSIAPGIDDQDRSSGPNLLPTVNPTFNWVRLAQRIP
VRVALDEVPPGMHLVAGQTATIRVRSASHD

Sequences:

>Translated_270_residues
MNRKLSLFVPVAVTLIAVGAAALTAWHLWQYYTGAPWTRDGRVRAEVVQVAPDVSGLVAQVLVADNAHVKRGQLLFVVDE
ARFRVALKQAQGAANAARAALVRAGKVDMATAQARLDQADAAVEAASLDLARCRVASPVDGHVADHLPRAGDFVNRGRPA
LSVVASRSQYVEGYFEETKLPAIRVGAAADVRIMGQSTALRGHVVSIAPGIDDQDRSSGPNLLPTVNPTFNWVRLAQRIP
VRVALDEVPPGMHLVAGQTATIRVRSASHD
>Mature_270_residues
MNRKLSLFVPVAVTLIAVGAAALTAWHLWQYYTGAPWTRDGRVRAEVVQVAPDVSGLVAQVLVADNAHVKRGQLLFVVDE
ARFRVALKQAQGAANAARAALVRAGKVDMATAQARLDQADAAVEAASLDLARCRVASPVDGHVADHLPRAGDFVNRGRPA
LSVVASRSQYVEGYFEETKLPAIRVGAAADVRIMGQSTALRGHVVSIAPGIDDQDRSSGPNLLPTVNPTFNWVRLAQRIP
VRVALDEVPPGMHLVAGQTATIRVRSASHD

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=273, Percent_Identity=39.1941391941392, Blast_Score=197, Evalue=5e-52,
Organism=Escherichia coli, GI1789637, Length=287, Percent_Identity=36.2369337979094, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1790519, Length=177, Percent_Identity=35.0282485875706, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788711, Length=133, Percent_Identity=33.8345864661654, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789041, Length=170, Percent_Identity=30, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 28791; Mature: 28791

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKLSLFVPVAVTLIAVGAAALTAWHLWQYYTGAPWTRDGRVRAEVVQVAPDVSGLVAQ
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHEECCCCHHHHHHH
VLVADNAHVKRGQLLFVVDEARFRVALKQAQGAANAARAALVRAGKVDMATAQARLDQAD
HHHCCCCCEECCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AAVEAASLDLARCRVASPVDGHVADHLPRAGDFVNRGRPALSVVASRSQYVEGYFEETKL
HHHHHHHHHHHHHEECCCCCCHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCC
PAIRVGAAADVRIMGQSTALRGHVVSIAPGIDDQDRSSGPNLLPTVNPTFNWVRLAQRIP
CEEEECCCCCEEEECCCCEECEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
VRVALDEVPPGMHLVAGQTATIRVRSASHD
EEEEECCCCCCEEEEECCEEEEEEECCCCC
>Mature Secondary Structure
MNRKLSLFVPVAVTLIAVGAAALTAWHLWQYYTGAPWTRDGRVRAEVVQVAPDVSGLVAQ
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHEECCCCHHHHHHH
VLVADNAHVKRGQLLFVVDEARFRVALKQAQGAANAARAALVRAGKVDMATAQARLDQAD
HHHCCCCCEECCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AAVEAASLDLARCRVASPVDGHVADHLPRAGDFVNRGRPALSVVASRSQYVEGYFEETKL
HHHHHHHHHHHHHEECCCCCCHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCC
PAIRVGAAADVRIMGQSTALRGHVVSIAPGIDDQDRSSGPNLLPTVNPTFNWVRLAQRIP
CEEEECCCCCEEEECCCCEECEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
VRVALDEVPPGMHLVAGQTATIRVRSASHD
EEEEECCCCCCEEEEECCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]