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The map label for this gene is nocR [H]

Identifier: 73537656

GI number: 73537656

Start: 426726

End: 427631

Strand: Reverse

Name: nocR [H]

Synonym: Reut_B3821

Alternate gene names: 73537656

Gene position: 427631-426726 (Counterclockwise)

Preceding gene: 73537657

Following gene: 73537655

Centisome position: 15.69

GC content: 58.83

Gene sequence:

>906_bases
ATGCAACTGAACCCCCGGCAACTAGAAGCCTTCCGCAGTGTCATGGTCGCCGGCAGCATGACTGTTGCAGCCGAGCTTCT
GAAGATCAGTCAGCCTGCGGTCAGTTCACTGATCAGGGAGCTCGAAAAGAGACTTGAGATTCGGCTGTTTCGACGGGAAG
GCAATCGGCTCATTCCGGGAGCGGAAGCCCAGCGACTGTTCCGGGAGGTGGACCGGTTCTACCAGGGCATGGAGCAGATC
GAGCGCGTGGCGATGGACCTCAAGTCTGCACGCATCGGTACGTTACGGGTTGCGTCAATGCATACGTTGGGCTTGAGCTT
GCTGAGCGAGGGAATCAAGGAGTTCTCGCTTTCGCGGCCCGATTTGGCCATCTCGCTCGACGTTCGAAACTCTCTGGGCG
TGCTTGAGCTTGCCGCCGCACACCAGATCGACATCGGATTTGTGCAGATGTCCGGCAACGAGTTCCCAGGCGTGGATGTT
TTTCCGTTGCCAAGCGTCGCGGCGGTCTGCGTGCTCCCACGTGGGCATGCTCTGGCCCGCAAAAGATCATTGAAGATAAC
TGACCTGCAAGACGAGCCGCTTATTTCCCTGAGCCGCAATAGCCCGGTACGTATGCGATTGGAGATGGAACTCGAAGCCG
CCGGCGTGACATGCAAGCCCTCGGTGGTCACATCGCTGGGCCACGTGGCGTGCAGTCTGGTTGCTGGCGGCCTTGGCCTG
ACAGTCGTCGATCCCTTTACCGCTCGCAGGGTGCGCGAGCCGGGCGTGGTTTGGCGCCCTTTGTGGCCGGTAGTGGAGTT
CCACTTTTCCATCGTTCTGCCTTCCCATCAACCGAAATCAAAAGTCGTCGAGGATTTCATCAAGGTGGTCAAGGCGCTCT
TCAAAGCAAACGCGGCTCGGCCCTAA

Upstream 100 bases:

>100_bases
GTTGGGCCGCTCCAGGACCCAAAGGAGCCTCTCATGCTGCTTGCGGCAGTGTGAGACGTTCATTACGCTTATGCTCCGAA
GAACCTCAGCCTAACTCCCG

Downstream 100 bases:

>100_bases
CCCTCCCCACTCCCGTGTCCGCAACAGCAAACCAGGGTTAGGGTTGTTCACACCCAGAGCTGGACGACCGTCGCACCAAG
CCTCTGTGCGAGCACAAGAA

Product: regulatory protein LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MQLNPRQLEAFRSVMVAGSMTVAAELLKISQPAVSSLIRELEKRLEIRLFRREGNRLIPGAEAQRLFREVDRFYQGMEQI
ERVAMDLKSARIGTLRVASMHTLGLSLLSEGIKEFSLSRPDLAISLDVRNSLGVLELAAAHQIDIGFVQMSGNEFPGVDV
FPLPSVAAVCVLPRGHALARKRSLKITDLQDEPLISLSRNSPVRMRLEMELEAAGVTCKPSVVTSLGHVACSLVAGGLGL
TVVDPFTARRVREPGVVWRPLWPVVEFHFSIVLPSHQPKSKVVEDFIKVVKALFKANAARP

Sequences:

>Translated_301_residues
MQLNPRQLEAFRSVMVAGSMTVAAELLKISQPAVSSLIRELEKRLEIRLFRREGNRLIPGAEAQRLFREVDRFYQGMEQI
ERVAMDLKSARIGTLRVASMHTLGLSLLSEGIKEFSLSRPDLAISLDVRNSLGVLELAAAHQIDIGFVQMSGNEFPGVDV
FPLPSVAAVCVLPRGHALARKRSLKITDLQDEPLISLSRNSPVRMRLEMELEAAGVTCKPSVVTSLGHVACSLVAGGLGL
TVVDPFTARRVREPGVVWRPLWPVVEFHFSIVLPSHQPKSKVVEDFIKVVKALFKANAARP
>Mature_301_residues
MQLNPRQLEAFRSVMVAGSMTVAAELLKISQPAVSSLIRELEKRLEIRLFRREGNRLIPGAEAQRLFREVDRFYQGMEQI
ERVAMDLKSARIGTLRVASMHTLGLSLLSEGIKEFSLSRPDLAISLDVRNSLGVLELAAAHQIDIGFVQMSGNEFPGVDV
FPLPSVAAVCVLPRGHALARKRSLKITDLQDEPLISLSRNSPVRMRLEMELEAAGVTCKPSVVTSLGHVACSLVAGGLGL
TVVDPFTARRVREPGVVWRPLWPVVEFHFSIVLPSHQPKSKVVEDFIKVVKALFKANAARP

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=284, Percent_Identity=34.8591549295775, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI157672245, Length=230, Percent_Identity=26.9565217391304, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788481, Length=149, Percent_Identity=31.5436241610738, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=238, Percent_Identity=23.5294117647059, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=24.6913580246914, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=26.3374485596708, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33199; Mature: 33199

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNPRQLEAFRSVMVAGSMTVAAELLKISQPAVSSLIRELEKRLEIRLFRREGNRLIPG
CCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AEAQRLFREVDRFYQGMEQIERVAMDLKSARIGTLRVASMHTLGLSLLSEGIKEFSLSRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCC
DLAISLDVRNSLGVLELAAAHQIDIGFVQMSGNEFPGVDVFPLPSVAAVCVLPRGHALAR
CEEEEEECCCCCCHHHHHHHCEEEEEEEEECCCCCCCCCCCCCCHHHHHEECCCCHHHHH
KRSLKITDLQDEPLISLSRNSPVRMRLEMELEAAGVTCKPSVVTSLGHVACSLVAGGLGL
HCCCEEECCCCCCCEEECCCCCEEEEEEEEEEECCCEECHHHHHHHHHHHHHHHHCCCCE
TVVDPFTARRVREPGVVWRPLWPVVEFHFSIVLPSHQPKSKVVEDFIKVVKALFKANAAR
EEECCHHHHHHCCCCCEECCHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
P
C
>Mature Secondary Structure
MQLNPRQLEAFRSVMVAGSMTVAAELLKISQPAVSSLIRELEKRLEIRLFRREGNRLIPG
CCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AEAQRLFREVDRFYQGMEQIERVAMDLKSARIGTLRVASMHTLGLSLLSEGIKEFSLSRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCC
DLAISLDVRNSLGVLELAAAHQIDIGFVQMSGNEFPGVDVFPLPSVAAVCVLPRGHALAR
CEEEEEECCCCCCHHHHHHHCEEEEEEEEECCCCCCCCCCCCCCHHHHHEECCCCHHHHH
KRSLKITDLQDEPLISLSRNSPVRMRLEMELEAAGVTCKPSVVTSLGHVACSLVAGGLGL
HCCCEEECCCCCCCEEECCCCCEEEEEEEEEEECCCEECHHHHHHHHHHHHHHHHCCCCE
TVVDPFTARRVREPGVVWRPLWPVVEFHFSIVLPSHQPKSKVVEDFIKVVKALFKANAAR
EEECCHHHHHHCCCCCEECCHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]