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The map label for this gene is yciR [C]

Identifier: 73537489

GI number: 73537489

Start: 231549

End: 232877

Strand: Direct

Name: yciR [C]

Synonym: Reut_B3654

Alternate gene names: 73537489

Gene position: 231549-232877 (Clockwise)

Preceding gene: 73537480

Following gene: 73537490

Centisome position: 8.49

GC content: 68.47

Gene sequence:

>1329_bases
ATGGTGGCCAAGTCGGGGGCGAAGGCGGCTGGCGCTTCGCCAGACGGGGAGACCGATCCGCTGACCGGGGTCGGGAATCG
CCTGGGATTCCTAAAACGGCTGGAGGCACGCCTGCATAGCGAGGCAGTGCCCCGCTGCGCATTGCTGCTGATCGGCATTG
ACGATTTCCGCGCCTTCAACGACATGCACGGCCATGCCGAGGGCGATCTGATCCTGCAGGGCGTGGCACGCCGGCTGCGC
GATGCTTCCCCGCGCGATGCCGTGATCGGCCGTATCGGCAGCGACGAGTTCTCGGTGTTGCTGCCGTCCATTTCCGATCC
GACCCTGGTGCGGCACGTCGGCGCCGCCATCCTTTCCATGCTGACCGCGCCGCACGAGCACAGCGGGCGCCGCCACCACG
TGCTCGCCAGCGTCGGCGCATGCGTGATGCCGGCGGCCGGCGATCTTGCGTCGGACGCGCTCGCGGCCGCCAGCCTGGCG
CTGGCCCGCGCCAAGCATGACGGCGGACGCACCATCCGGTTTTTCAAGCCGCAGATGCGGCAGGACGTGACCACGCGGCT
GTCGCTGGTCCAGGCCCTGCACGAAGCGTATGCGCAGCGGCAGTTCGAACTGCACTACCAGCCTCAGGTCGATCTGCGCA
CCGGCCATATCCACGGAGCCGAGGCGCTGCTGCGCTGGCGCCATCCGACCCGCGGCCTGCTCGCGCCGGCCAGTTTTATC
GATGCCCTGGCGGCCAGCAGCGTGGCCAGCGACGTCGGCATGTGGCTGCTGCAGACCGCCTGCGCGCAGGCGCGTGCCTG
GTCGCTGACGCTGCCGCAGGCGCCGCGCGTGGCCATCAACCTGTTCGCGGCCCAACTGGCCGAAAGCCGGCTGGTGACCG
AGGTGCGCCACGTCCTGCGCTCGCTCGAACTGCCGCCGGCCGGCCTGGAGATCGAGATCACGGAGACCATCGCTCTGCAG
CAGGGCGACGAGGTGTCCGACCAGCTCCAGGCTCTGCGGCGCGACGGCGTGACCCTGACCTGCGATGACTTTGGCACGGG
CTACGCCTCGCTGAGCTTCCTCAAGTCGTTCCCGGTCGATCGGCTCAAGATCGACCAGTCCTTCGTGCGCAACGTGACGC
AAGACCCAGTGGACGCCGCCATCGTACGGTCCGTGATCAACGTCGGGCAAAGCCTGCAGATCGGCGTGGTGGCCGAGGGC
GTGGAAACGGTCGAGCAGCGAGACTTCCTGCTGGCCAATGGCTGTTGGGAGGCGCAGGGCTACCTGTATGGGCGGCCGAT
GCCAGCCGAGCGCCTTACGGAGCACTTGCGGGAGCAGTCTGGGAATTGA

Upstream 100 bases:

>100_bases
GGGCCGGTTTGCCGGAAGCGCTTGCTTTTTTTATGGTTTTCGTCACACTTCCAGAATCGCAGATCTGGTAACAATGTCGA
TAATCGCAAATGAGGCAGGG

Downstream 100 bases:

>100_bases
GGAAAGGGGGGCATGCCGGGCCAATAGGGGCGCCACATTCGGCCGCCTGAACTGCCGGCAGAGAACGGCCGGCACAGAGC
GGCCGGCACAGAGCGGCCGT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MVAKSGAKAAGASPDGETDPLTGVGNRLGFLKRLEARLHSEAVPRCALLLIGIDDFRAFNDMHGHAEGDLILQGVARRLR
DASPRDAVIGRIGSDEFSVLLPSISDPTLVRHVGAAILSMLTAPHEHSGRRHHVLASVGACVMPAAGDLASDALAAASLA
LARAKHDGGRTIRFFKPQMRQDVTTRLSLVQALHEAYAQRQFELHYQPQVDLRTGHIHGAEALLRWRHPTRGLLAPASFI
DALAASSVASDVGMWLLQTACAQARAWSLTLPQAPRVAINLFAAQLAESRLVTEVRHVLRSLELPPAGLEIEITETIALQ
QGDEVSDQLQALRRDGVTLTCDDFGTGYASLSFLKSFPVDRLKIDQSFVRNVTQDPVDAAIVRSVINVGQSLQIGVVAEG
VETVEQRDFLLANGCWEAQGYLYGRPMPAERLTEHLREQSGN

Sequences:

>Translated_442_residues
MVAKSGAKAAGASPDGETDPLTGVGNRLGFLKRLEARLHSEAVPRCALLLIGIDDFRAFNDMHGHAEGDLILQGVARRLR
DASPRDAVIGRIGSDEFSVLLPSISDPTLVRHVGAAILSMLTAPHEHSGRRHHVLASVGACVMPAAGDLASDALAAASLA
LARAKHDGGRTIRFFKPQMRQDVTTRLSLVQALHEAYAQRQFELHYQPQVDLRTGHIHGAEALLRWRHPTRGLLAPASFI
DALAASSVASDVGMWLLQTACAQARAWSLTLPQAPRVAINLFAAQLAESRLVTEVRHVLRSLELPPAGLEIEITETIALQ
QGDEVSDQLQALRRDGVTLTCDDFGTGYASLSFLKSFPVDRLKIDQSFVRNVTQDPVDAAIVRSVINVGQSLQIGVVAEG
VETVEQRDFLLANGCWEAQGYLYGRPMPAERLTEHLREQSGN
>Mature_442_residues
MVAKSGAKAAGASPDGETDPLTGVGNRLGFLKRLEARLHSEAVPRCALLLIGIDDFRAFNDMHGHAEGDLILQGVARRLR
DASPRDAVIGRIGSDEFSVLLPSISDPTLVRHVGAAILSMLTAPHEHSGRRHHVLASVGACVMPAAGDLASDALAAASLA
LARAKHDGGRTIRFFKPQMRQDVTTRLSLVQALHEAYAQRQFELHYQPQVDLRTGHIHGAEALLRWRHPTRGLLAPASFI
DALAASSVASDVGMWLLQTACAQARAWSLTLPQAPRVAINLFAAQLAESRLVTEVRHVLRSLELPPAGLEIEITETIALQ
QGDEVSDQLQALRRDGVTLTCDDFGTGYASLSFLKSFPVDRLKIDQSFVRNVTQDPVDAAIVRSVINVGQSLQIGVVAEG
VETVEQRDFLLANGCWEAQGYLYGRPMPAERLTEHLREQSGN

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=417, Percent_Identity=32.8537170263789, Blast_Score=235, Evalue=4e-63,
Organism=Escherichia coli, GI87081921, Length=417, Percent_Identity=32.3741007194245, Blast_Score=218, Evalue=8e-58,
Organism=Escherichia coli, GI226510982, Length=431, Percent_Identity=29.9303944315545, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI87081845, Length=222, Percent_Identity=34.6846846846847, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786507, Length=251, Percent_Identity=29.8804780876494, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1790496, Length=262, Percent_Identity=31.6793893129771, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787055, Length=402, Percent_Identity=25.8706467661692, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=33.201581027668, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=30.8641975308642, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=33.7448559670782, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=31.6872427983539, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87082096, Length=248, Percent_Identity=28.6290322580645, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787410, Length=175, Percent_Identity=29.7142857142857, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1788381, Length=397, Percent_Identity=24.6851385390428, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=126, Percent_Identity=30.952380952381, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 47851; Mature: 47851

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAKSGAKAAGASPDGETDPLTGVGNRLGFLKRLEARLHSEAVPRCALLLIGIDDFRAFN
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
DMHGHAEGDLILQGVARRLRDASPRDAVIGRIGSDEFSVLLPSISDPTLVRHVGAAILSM
HCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
LTAPHEHSGRRHHVLASVGACVMPAAGDLASDALAAASLALARAKHDGGRTIRFFKPQMR
HHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHH
QDVTTRLSLVQALHEAYAQRQFELHYQPQVDLRTGHIHGAEALLRWRHPTRGLLAPASFI
HHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEECCCCHHHHHHHHCCCCCCCCCHHHHH
DALAASSVASDVGMWLLQTACAQARAWSLTLPQAPRVAINLFAAQLAESRLVTEVRHVLR
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SLELPPAGLEIEITETIALQQGDEVSDQLQALRRDGVTLTCDDFGTGYASLSFLKSFPVD
HCCCCCCCCEEEEEHHEECCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCH
RLKIDQSFVRNVTQDPVDAAIVRSVINVGQSLQIGVVAEGVETVEQRDFLLANGCWEAQG
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCEEEECCCCCCCC
YLYGRPMPAERLTEHLREQSGN
EEECCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MVAKSGAKAAGASPDGETDPLTGVGNRLGFLKRLEARLHSEAVPRCALLLIGIDDFRAFN
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
DMHGHAEGDLILQGVARRLRDASPRDAVIGRIGSDEFSVLLPSISDPTLVRHVGAAILSM
HCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
LTAPHEHSGRRHHVLASVGACVMPAAGDLASDALAAASLALARAKHDGGRTIRFFKPQMR
HHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHH
QDVTTRLSLVQALHEAYAQRQFELHYQPQVDLRTGHIHGAEALLRWRHPTRGLLAPASFI
HHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEECCCCHHHHHHHHCCCCCCCCCHHHHH
DALAASSVASDVGMWLLQTACAQARAWSLTLPQAPRVAINLFAAQLAESRLVTEVRHVLR
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SLELPPAGLEIEITETIALQQGDEVSDQLQALRRDGVTLTCDDFGTGYASLSFLKSFPVD
HCCCCCCCCEEEEEHHEECCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCH
RLKIDQSFVRNVTQDPVDAAIVRSVINVGQSLQIGVVAEGVETVEQRDFLLANGCWEAQG
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCEEEECCCCCCCC
YLYGRPMPAERLTEHLREQSGN
EEECCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]