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The map label for this gene is yhjC [H]

Identifier: 73537322

GI number: 73537322

Start: 24604

End: 25527

Strand: Direct

Name: yhjC [H]

Synonym: Reut_B3487

Alternate gene names: 73537322

Gene position: 24604-25527 (Clockwise)

Preceding gene: 73537318

Following gene: 73537323

Centisome position: 0.9

GC content: 68.72

Gene sequence:

>924_bases
ATGGAAGCCCTGAACCTGCTCGAATCCTTTGTCCATAGCGCTGAAACGGGCAGCTTCTCGGCGGCGGCACGCCGGCTGGG
GCTGACCCCGGCCGCGGTCAGCAAGAATGTCGCGCGCCTGGAGCGTCACCTTGGGCTGCGCCTGTTCCATCGGAGCACGC
GGCGCCTGACGCTGACCTCGGGCGGCGAGCAGTTCTTTTCGCAGGTGTCCAACCCGTTCTCGGCATTGCGCGATGCATTT
GCCGGCGCGGCCGAGGATGCTGGCAAGCCCGCCGGCGTGCTCAAGGTCGGCATGGCGCTGGCGTTCGGGCGCGAGTACCT
GGTGCCGCTGCTGGGCGAGTTCCTGGCGCTCTATCCCGGCATCGTGCCGGACTGGCACTTCGAGAACCGTCCCACGGACC
TGATCCGGGACGGCTTCGATGCCGCCATTGGCGGTGGCATCGAATTGACCGAGGGCGTGGTCGCGCGCGAGCTTGCCCGG
ACGCACGTGGTCGCGGTGGCATCGCCGGCGTTCATGCAGGGAAAGGCGCTGCCCAGGCACCCGTCGGATCTGCTTGCATT
TGACGGCATCGTGCGGCGTTCAGGCGCCACCGGCCGCTTGCGCGCGTGGACCTTGCGCAACCAGGTCGGCGAACAGGCGC
CAGCGGAACACCGCGCGCGATTGATCTTCGACGACCCCGAAGCCATGGCCCACGCGGCCATGCACGGGCTAGGCATCGCG
CTGCTGCCGATGCCCCATGCCGCGCCACGGCTAGAGAGCGGGGCGCTGATGCGGCTGCTGCCCGGCTGGTACGCCGACAA
CGGGCCGATCGCGCTCTACTACCCGAGCCGCACGCTGCTGCCGCCGCGCACGCGCGTATTCATCGAGTTCGTGGTCGACG
CGTTTCGCAGCAAGGGGTTGGCGCGGCGATTTGATGGGCGGTGA

Upstream 100 bases:

>100_bases
AAGCGTTGGGGTTGGTGCGTCGAAGTATGGTCAGTGGATTCCCCTACCGGTAGGCATCGCTGTGGATCATTTTTTTCAAC
CATTGGTATAAGCTGGGGGC

Downstream 100 bases:

>100_bases
GCGCAACTTCACGTTGCATTCCATGGCATTGGATTAACCTGTAGCCATGCGCGCTTTAGCGCGACACAACCACGAAAGTG
GATCCTGAAACACTGCGCTC

Product: regulatory protein LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEALNLLESFVHSAETGSFSAAARRLGLTPAAVSKNVARLERHLGLRLFHRSTRRLTLTSGGEQFFSQVSNPFSALRDAF
AGAAEDAGKPAGVLKVGMALAFGREYLVPLLGEFLALYPGIVPDWHFENRPTDLIRDGFDAAIGGGIELTEGVVARELAR
THVVAVASPAFMQGKALPRHPSDLLAFDGIVRRSGATGRLRAWTLRNQVGEQAPAEHRARLIFDDPEAMAHAAMHGLGIA
LLPMPHAAPRLESGALMRLLPGWYADNGPIALYYPSRTLLPPRTRVFIEFVVDAFRSKGLARRFDGR

Sequences:

>Translated_307_residues
MEALNLLESFVHSAETGSFSAAARRLGLTPAAVSKNVARLERHLGLRLFHRSTRRLTLTSGGEQFFSQVSNPFSALRDAF
AGAAEDAGKPAGVLKVGMALAFGREYLVPLLGEFLALYPGIVPDWHFENRPTDLIRDGFDAAIGGGIELTEGVVARELAR
THVVAVASPAFMQGKALPRHPSDLLAFDGIVRRSGATGRLRAWTLRNQVGEQAPAEHRARLIFDDPEAMAHAAMHGLGIA
LLPMPHAAPRLESGALMRLLPGWYADNGPIALYYPSRTLLPPRTRVFIEFVVDAFRSKGLARRFDGR
>Mature_307_residues
MEALNLLESFVHSAETGSFSAAARRLGLTPAAVSKNVARLERHLGLRLFHRSTRRLTLTSGGEQFFSQVSNPFSALRDAF
AGAAEDAGKPAGVLKVGMALAFGREYLVPLLGEFLALYPGIVPDWHFENRPTDLIRDGFDAAIGGGIELTEGVVARELAR
THVVAVASPAFMQGKALPRHPSDLLAFDGIVRRSGATGRLRAWTLRNQVGEQAPAEHRARLIFDDPEAMAHAAMHGLGIA
LLPMPHAAPRLESGALMRLLPGWYADNGPIALYYPSRTLLPPRTRVFIEFVVDAFRSKGLARRFDGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=30.0675675675676, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=30.6122448979592, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=27.112676056338, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=28.9655172413793, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789639, Length=316, Percent_Identity=26.8987341772152, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787589, Length=277, Percent_Identity=27.0758122743682, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=32.9457364341085, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1786448, Length=254, Percent_Identity=29.5275590551181, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1788706, Length=262, Percent_Identity=27.0992366412214, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787601, Length=118, Percent_Identity=29.6610169491525, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=25.0996015936255, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33378; Mature: 33378

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALNLLESFVHSAETGSFSAAARRLGLTPAAVSKNVARLERHLGLRLFHRSTRRLTLTS
CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
GGEQFFSQVSNPFSALRDAFAGAAEDAGKPAGVLKVGMALAFGREYLVPLLGEFLALYPG
CHHHHHHHHCCHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IVPDWHFENRPTDLIRDGFDAAIGGGIELTEGVVARELARTHVVAVASPAFMQGKALPRH
CCCCCCCCCCCHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCHHHCCCCCCCC
PSDLLAFDGIVRRSGATGRLRAWTLRNQVGEQAPAEHRARLIFDDPEAMAHAAMHGLGIA
CHHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCHHHCCEEEECCHHHHHHHHHHHCCEE
LLPMPHAAPRLESGALMRLLPGWYADNGPIALYYPSRTLLPPRTRVFIEFVVDAFRSKGL
EECCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
ARRFDGR
HHHCCCC
>Mature Secondary Structure
MEALNLLESFVHSAETGSFSAAARRLGLTPAAVSKNVARLERHLGLRLFHRSTRRLTLTS
CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
GGEQFFSQVSNPFSALRDAFAGAAEDAGKPAGVLKVGMALAFGREYLVPLLGEFLALYPG
CHHHHHHHHCCHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IVPDWHFENRPTDLIRDGFDAAIGGGIELTEGVVARELARTHVVAVASPAFMQGKALPRH
CCCCCCCCCCCHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCHHHCCCCCCCC
PSDLLAFDGIVRRSGATGRLRAWTLRNQVGEQAPAEHRARLIFDDPEAMAHAAMHGLGIA
CHHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCHHHCCEEEECCHHHHHHHHHHHCCEE
LLPMPHAAPRLESGALMRLLPGWYADNGPIALYYPSRTLLPPRTRVFIEFVVDAFRSKGL
EECCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
ARRFDGR
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]