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The map label for this gene is rpoE [H]

Identifier: 73542827

GI number: 73542827

Start: 3453595

End: 3454146

Strand: Reverse

Name: rpoE [H]

Synonym: Reut_A3143

Alternate gene names: 73542827

Gene position: 3454146-3453595 (Counterclockwise)

Preceding gene: 73542828

Following gene: 73542826

Centisome position: 90.74

GC content: 70.65

Gene sequence:

>552_bases
ATGGACGGGTTTGAAGGCCAGCTGATCGCGCTGGCGCCGCGCCTGCGGCGCCACGCGCGTGGCCTGACCAGCGACGCGGC
GCAGGCCGATGACCTGGTCCAGGACACCCTGGAGCGCGCGCTGCGCTACCGCTGGCGCTTTCGCCTGCGTCCGGGCGCAT
GGTGGGGCGATGGCGCCGACGGCCTGCTGCCGTGGCTGCTCACGCTGATGCACCGCCTGCGCCTGAATGCCGTGCGCCGG
AAGGACCTGGTCGTCGCCATGGAAACTCTGCCGGAGGTCAGCGCCCCGGCCACGGATCCCGGGCTGCGGCGCGATCTGCT
GCAGGCGCTGACCGCCTTGCCCGAAGCCCAGCGCGCGGTGCTGCTGCTGGTCAGCCTGGAACAGTTCACGTACGCGGAGG
CCGCACACGTGCTCAATGTTCCGGTTGGCACCGTGATGTCCCGCCTGGCGCGAGCGCGCGAACACATGCGCACCCTGCTC
GACGGCACAGTGAAGCCACAACATGGCGCACAGGCCACCGAGCCGGCCACGACGCTGCAGCGAGTGAAATGA

Upstream 100 bases:

>100_bases
AAGGATGCCAAGGCGGGCGACCGTATGGGCGACAACCTCAACAATGTCTGGCACGTCGCCAAGCCCTGAGCACCCGGCGA
CAGATTGAGTCCGGCTAGGC

Downstream 100 bases:

>100_bases
TGTCCCCGATCCACGAAGCCGACCTGCATGCCTACGCCGACGGCCAGCTAAGCGGCCGCCGCCGCGCAGTCGTGGAGGCA
TACCTGGCCGAGCAGCCGGA

Product: sigma-70 region 2:sigma-70 region 4

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MDGFEGQLIALAPRLRRHARGLTSDAAQADDLVQDTLERALRYRWRFRLRPGAWWGDGADGLLPWLLTLMHRLRLNAVRR
KDLVVAMETLPEVSAPATDPGLRRDLLQALTALPEAQRAVLLLVSLEQFTYAEAAHVLNVPVGTVMSRLARAREHMRTLL
DGTVKPQHGAQATEPATTLQRVK

Sequences:

>Translated_183_residues
MDGFEGQLIALAPRLRRHARGLTSDAAQADDLVQDTLERALRYRWRFRLRPGAWWGDGADGLLPWLLTLMHRLRLNAVRR
KDLVVAMETLPEVSAPATDPGLRRDLLQALTALPEAQRAVLLLVSLEQFTYAEAAHVLNVPVGTVMSRLARAREHMRTLL
DGTVKPQHGAQATEPATTLQRVK
>Mature_183_residues
MDGFEGQLIALAPRLRRHARGLTSDAAQADDLVQDTLERALRYRWRFRLRPGAWWGDGADGLLPWLLTLMHRLRLNAVRR
KDLVVAMETLPEVSAPATDPGLRRDLLQALTALPEAQRAVLLLVSLEQFTYAEAAHVLNVPVGTVMSRLARAREHMRTLL
DGTVKPQHGAQATEPATTLQRVK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20451; Mature: 20451

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGFEGQLIALAPRLRRHARGLTSDAAQADDLVQDTLERALRYRWRFRLRPGAWWGDGAD
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GLLPWLLTLMHRLRLNAVRRKDLVVAMETLPEVSAPATDPGLRRDLLQALTALPEAQRAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
LLLVSLEQFTYAEAAHVLNVPVGTVMSRLARAREHMRTLLDGTVKPQHGAQATEPATTLQ
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
RVK
HCC
>Mature Secondary Structure
MDGFEGQLIALAPRLRRHARGLTSDAAQADDLVQDTLERALRYRWRFRLRPGAWWGDGAD
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GLLPWLLTLMHRLRLNAVRRKDLVVAMETLPEVSAPATDPGLRRDLLQALTALPEAQRAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
LLLVSLEQFTYAEAAHVLNVPVGTVMSRLARAREHMRTLLDGTVKPQHGAQATEPATTLQ
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
RVK
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]