Click here to switch to the map view.

The map label for this gene is ygaD [C]

Identifier: 73542535

GI number: 73542535

Start: 3123559

End: 3124056

Strand: Direct

Name: ygaD [C]

Synonym: Reut_A2850

Alternate gene names: 73542535

Gene position: 3123559-3124056 (Clockwise)

Preceding gene: 73542534

Following gene: 73542537

Centisome position: 82.06

GC content: 67.07

Gene sequence:

>498_bases
ATGTCCATCAGCCGCTTGCTCGACCAACTGGCCATCCAGGCCGGCGTAGCCCTCGCCGAAACATCGCTGATGCTGGCCAC
GGCCGAGTCCTGCACCGGAGGACTCGTTGCCGCCGCCATTACCGATGTATCGGGCTCTTCCGGATGGTTCGAACGCGGCT
TTGTCACGTACTCGAACGAGGCCAAGAGCACGATGCTCGGCGTGCCCGCCAAGATGATCCGCGACTACGGCGCGGTCAGC
GAGGAAGTGGCCCGCGCGATGGCGGAGGGTGCGCTGCTCAACAGCCGCGCACAGGTATCGCTGTCCATCACAGGCGTGGC
CGGCCCCAACGGCGGCACGCCCGAGAAGCCGGTCGGCATGGTCTGCTTCGGCTGGAGCAACCGCATCACCACGCGCACCG
AGACCCAGCGCTTCAAGGGCGACCGCGCACAGATCCGCCGCCAGGCGGCCGAGCATGCGATGCGCGGACTGCTGGAACTG
GTACGCAACGAGGCCTGA

Upstream 100 bases:

>100_bases
CTGCTGGTATTCGCGCTGTGGCGCTCGTTCTGACGCTTTCGCCACGTTTCCCGCGACGTTCACTCGCCATCTTTCTTCAA
ACGCCACGCACCTTTCACCC

Downstream 100 bases:

>100_bases
AACGACAAAGGCCGCGCCCGGTCAGGCGCGGCCTTTTGCTGTACTGACGCTATCTGACAGCCTGGCTCGGATTACCCGTG
CCGGTAGCGGTTGATGGTAT

Product: CinA, C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MSISRLLDQLAIQAGVALAETSLMLATAESCTGGLVAAAITDVSGSSGWFERGFVTYSNEAKSTMLGVPAKMIRDYGAVS
EEVARAMAEGALLNSRAQVSLSITGVAGPNGGTPEKPVGMVCFGWSNRITTRTETQRFKGDRAQIRRQAAEHAMRGLLEL
VRNEA

Sequences:

>Translated_165_residues
MSISRLLDQLAIQAGVALAETSLMLATAESCTGGLVAAAITDVSGSSGWFERGFVTYSNEAKSTMLGVPAKMIRDYGAVS
EEVARAMAEGALLNSRAQVSLSITGVAGPNGGTPEKPVGMVCFGWSNRITTRTETQRFKGDRAQIRRQAAEHAMRGLLEL
VRNEA
>Mature_164_residues
SISRLLDQLAIQAGVALAETSLMLATAESCTGGLVAAAITDVSGSSGWFERGFVTYSNEAKSTMLGVPAKMIRDYGAVSE
EVARAMAEGALLNSRAQVSLSITGVAGPNGGTPEKPVGMVCFGWSNRITTRTETQRFKGDRAQIRRQAAEHAMRGLLELV
RNEA

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=160, Percent_Identity=51.25, Blast_Score=148, Evalue=2e-37,
Organism=Escherichia coli, GI1787818, Length=119, Percent_Identity=42.0168067226891, Blast_Score=95, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 17451; Mature: 17320

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISRLLDQLAIQAGVALAETSLMLATAESCTGGLVAAAITDVSGSSGWFERGFVTYSNE
CCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHCCCCCCCCCCCCCEEECCC
AKSTMLGVPAKMIRDYGAVSEEVARAMAEGALLNSRAQVSLSITGVAGPNGGTPEKPVGM
CCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEE
VCFGWSNRITTRTETQRFKGDRAQIRRQAAEHAMRGLLELVRNEA
EEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SISRLLDQLAIQAGVALAETSLMLATAESCTGGLVAAAITDVSGSSGWFERGFVTYSNE
CHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHCCCCCCCCCCCCCEEECCC
AKSTMLGVPAKMIRDYGAVSEEVARAMAEGALLNSRAQVSLSITGVAGPNGGTPEKPVGM
CCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEE
VCFGWSNRITTRTETQRFKGDRAQIRRQAAEHAMRGLLELVRNEA
EEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA