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The map label for this gene is rpoE [H]

Identifier: 73541479

GI number: 73541479

Start: 1954053

End: 1954670

Strand: Reverse

Name: rpoE [H]

Synonym: Reut_A1790

Alternate gene names: 73541479

Gene position: 1954670-1954053 (Counterclockwise)

Preceding gene: 73541480

Following gene: 73541478

Centisome position: 51.35

GC content: 63.59

Gene sequence:

>618_bases
GTGATAGCAACCGACAAGTCCAGCCGCTTCGCGCAAGTGGCGCTGCCGCATCTGGATGCCGCCTACAACCTGGCGCGCTG
GCTAAGCGGCAGCGCAAGCGATGCAGACGATATCGTGCAGGATGCCTATCTGCGCGCATACCGATTCTTCGACAGCTTCA
ACGGCGATGGCGCGCGCGCATGGCTGCTGGCCATCGTCAGGAACACGTGGTTCAGCGAATGGCGCCGGCGGCGTGATGCG
GCGGACGGGACGCCTTACGACGATACGTTGCATGGCGATGAGCGATTGCCCGGTTGGGTCGACGATATCGGCACCAATCC
GGAAATGCTTGCGGTGCGCCACGACGAAGTGCAGCTGGTCCACCGGGCGCTCGAACGCTTGCCAGTCGTGTACCGAGAAG
TGCTTGTCCTGCGGGAACTCGAAGACATGAGCTATCGCGATATCGCTCTGGTTGCCGATATCCCGATCGGAACCGTGATG
TCGCGGCTGGCGCGCGCGCGTCACATGCTCTGTGCCGCGGTGCGCGCCGAGCAGGCCAGGGCGCATAGCCATGTCGGCGG
CAGCGCGCGTCTTCAGGTGCCGGTGCAGGACCATTCGATGGGAGCGAATCATGGATGA

Upstream 100 bases:

>100_bases
CCGCATTCTATTCCCGGATCCGGATTAATAAAAATCCGCAACGCCGGGAATAAATCCCGTTTTCTGGCGGTTCTACACAG
GCCGGGAACAGGGGAGCGCC

Downstream 100 bases:

>100_bases
CGATGCGATGGAAAACTCGCTGCACGGCATGCTGCACGACGGATCGCTCTATTACCGTGCGCCGGCGCATCTGTCCGCGC
GCGTGCTGGCCGCCCTGCCA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MIATDKSSRFAQVALPHLDAAYNLARWLSGSASDADDIVQDAYLRAYRFFDSFNGDGARAWLLAIVRNTWFSEWRRRRDA
ADGTPYDDTLHGDERLPGWVDDIGTNPEMLAVRHDEVQLVHRALERLPVVYREVLVLRELEDMSYRDIALVADIPIGTVM
SRLARARHMLCAAVRAEQARAHSHVGGSARLQVPVQDHSMGANHG

Sequences:

>Translated_205_residues
MIATDKSSRFAQVALPHLDAAYNLARWLSGSASDADDIVQDAYLRAYRFFDSFNGDGARAWLLAIVRNTWFSEWRRRRDA
ADGTPYDDTLHGDERLPGWVDDIGTNPEMLAVRHDEVQLVHRALERLPVVYREVLVLRELEDMSYRDIALVADIPIGTVM
SRLARARHMLCAAVRAEQARAHSHVGGSARLQVPVQDHSMGANHG
>Mature_205_residues
MIATDKSSRFAQVALPHLDAAYNLARWLSGSASDADDIVQDAYLRAYRFFDSFNGDGARAWLLAIVRNTWFSEWRRRRDA
ADGTPYDDTLHGDERLPGWVDDIGTNPEMLAVRHDEVQLVHRALERLPVVYREVLVLRELEDMSYRDIALVADIPIGTVM
SRLARARHMLCAAVRAEQARAHSHVGGSARLQVPVQDHSMGANHG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=143, Percent_Identity=37.0629370629371, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23059; Mature: 23059

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATDKSSRFAQVALPHLDAAYNLARWLSGSASDADDIVQDAYLRAYRFFDSFNGDGARA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
WLLAIVRNTWFSEWRRRRDAADGTPYDDTLHGDERLPGWVDDIGTNPEMLAVRHDEVQLV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEHHHHHHH
HRALERLPVVYREVLVLRELEDMSYRDIALVADIPIGTVMSRLARARHMLCAAVRAEQAR
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
AHSHVGGSARLQVPVQDHSMGANHG
HHHCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MIATDKSSRFAQVALPHLDAAYNLARWLSGSASDADDIVQDAYLRAYRFFDSFNGDGARA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
WLLAIVRNTWFSEWRRRRDAADGTPYDDTLHGDERLPGWVDDIGTNPEMLAVRHDEVQLV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEHHHHHHH
HRALERLPVVYREVLVLRELEDMSYRDIALVADIPIGTVMSRLARARHMLCAAVRAEQAR
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
AHSHVGGSARLQVPVQDHSMGANHG
HHHCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]