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The map label for this gene is yaiC [C]

Identifier: 73541438

GI number: 73541438

Start: 1900394

End: 1901824

Strand: Reverse

Name: yaiC [C]

Synonym: Reut_A1749

Alternate gene names: 73541438

Gene position: 1901824-1900394 (Counterclockwise)

Preceding gene: 73541446

Following gene: 73541437

Centisome position: 49.96

GC content: 63.87

Gene sequence:

>1431_bases
ATGTATACTCGCCGCAGGCCCATCTCTGACGTGTGTATGCTTGCACCGCCGACCTCGGAAGACGTACCGACCGCATCGCG
GTCCCTGGCGCAATCGGCGGAGGGCCGTGCCGGGGACGGGGTGTTGCAGGGCGACGATATCGAGACACTTCGCAAGCGCG
AACGGCTGCTAGCGCTGGCGATTGCAGGCAGTGGCACTGGGATCTGGGATCGCAACGTCGTGACAGGCGAAATCCAGTAT
TCGAGCGGCTGGAAAGCCATGCTGGGCTATGCCGACTGGGAGGTATCCAACCGGATCGAAGACAGCTACCAACGTCTTCA
CCCCGACGATCTCGATCGCGTCAAAGCGACAATGCAGGCCCACTTCGAGGGCCGCAGCGACAGCTATGAAGTCGAACACC
GCATCCGTTGCCGGGACGGAAGCTACAAATGGATCTGCAGCCGGGGCAGGGTGGTTGACCGCGACGCATCCGGCCGTGCG
CTGCGCATGGTGGGCACTTCCACGGACATTACCTCGCAGCGTGCGATGTCGGAGAGACTGCTTGAAGCGGTCAGCCTGAT
CACGAATCTCACCAACGAGGTGCCGGGGCTGGTGTTCCAGTACCGCTCGGTGCCCGGCGGCCCATCGTTCTTTCCCTACG
CAAGCGCGGGCATCACCGAGATCTACGAGCTGACCCCAGCCCAGGTGGCGGCGGATGCGTCGTGTATCGACGCGTTGATC
CACCCGGCCGATCTGGCTGCCTATCGAGCTTCGTTTGACGCTTCGGCGGCACAGCTTTCGCCGTGGCATCTCGAGTATCG
CGTGCAACTGCCAATGCAGGGCCTGCGCTGGCGGCAGGGCGATGCCAGGCCACAGCGTCTTCCCGATGGCAGCATCCTGT
GGCACGGCTTCATTACGGACGTGACCGAGCGCAAGCGGATCGAAGCAGAATTGCAAGAGCTTGCGACCATCGACAGCCTG
ACGGGCTTGCCGAACCGGCGCCATTTCATGGCGCAGATCGAGACGCGGCTGGCGAGCTTGCAGAGCGGCCGCGGCGCGGC
TACGGCGCTCATGATGTGCGACCTTGACCATTTCAAGTCGATCAATGACCGCTGGGGGCACGGGGTCGGCGACCGGGTGC
TGCGCCATTTCGGTAGCATCCTGCGCGCGCATTTGCGCCCCGGCGACATGGCCGGACGTCTCGGCGGCGAAGAGTTCGGG
ATTCTGCTCGATGGGGCCGACATGCGCGGCGCGGTTGGCGTGGCGCGGCAGATTCAGCAACGCATTGCCGAGTACCCGCT
GATCGAGCATGAGCAGCGGATCGACCTGACAGTCAGCATCGGTATTGCGCTCATGACCGCGGCCGATGCCAATGCCGAAG
CCCCGCTATCGCGTAGCGACCTGGCGCTGTATCGCGCGAAGAAGAGCGGGCGCAACCGGATCGAATCCTGA

Upstream 100 bases:

>100_bases
TACTAGTATACCCCGGGTACGGATTCTGGGTAAGTCGGTTATTGAGTTGCCACGTGATGAAGGGCTTGCGCGCAACATCC
TGCTGCGTACGGAATAGCAC

Downstream 100 bases:

>100_bases
CGCGTTCAGGCCTGCAATCCACCGGGCAAAGAGGGCATCCTGACCATGCGGAATGCACGCAGTTCGTTCTTGAATGGCTT
TGCGCAGAACAAGCCCGTGC

Product: PAS:GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MYTRRRPISDVCMLAPPTSEDVPTASRSLAQSAEGRAGDGVLQGDDIETLRKRERLLALAIAGSGTGIWDRNVVTGEIQY
SSGWKAMLGYADWEVSNRIEDSYQRLHPDDLDRVKATMQAHFEGRSDSYEVEHRIRCRDGSYKWICSRGRVVDRDASGRA
LRMVGTSTDITSQRAMSERLLEAVSLITNLTNEVPGLVFQYRSVPGGPSFFPYASAGITEIYELTPAQVAADASCIDALI
HPADLAAYRASFDASAAQLSPWHLEYRVQLPMQGLRWRQGDARPQRLPDGSILWHGFITDVTERKRIEAELQELATIDSL
TGLPNRRHFMAQIETRLASLQSGRGAATALMMCDLDHFKSINDRWGHGVGDRVLRHFGSILRAHLRPGDMAGRLGGEEFG
ILLDGADMRGAVGVARQIQQRIAEYPLIEHEQRIDLTVSIGIALMTAADANAEAPLSRSDLALYRAKKSGRNRIES

Sequences:

>Translated_476_residues
MYTRRRPISDVCMLAPPTSEDVPTASRSLAQSAEGRAGDGVLQGDDIETLRKRERLLALAIAGSGTGIWDRNVVTGEIQY
SSGWKAMLGYADWEVSNRIEDSYQRLHPDDLDRVKATMQAHFEGRSDSYEVEHRIRCRDGSYKWICSRGRVVDRDASGRA
LRMVGTSTDITSQRAMSERLLEAVSLITNLTNEVPGLVFQYRSVPGGPSFFPYASAGITEIYELTPAQVAADASCIDALI
HPADLAAYRASFDASAAQLSPWHLEYRVQLPMQGLRWRQGDARPQRLPDGSILWHGFITDVTERKRIEAELQELATIDSL
TGLPNRRHFMAQIETRLASLQSGRGAATALMMCDLDHFKSINDRWGHGVGDRVLRHFGSILRAHLRPGDMAGRLGGEEFG
ILLDGADMRGAVGVARQIQQRIAEYPLIEHEQRIDLTVSIGIALMTAADANAEAPLSRSDLALYRAKKSGRNRIES
>Mature_476_residues
MYTRRRPISDVCMLAPPTSEDVPTASRSLAQSAEGRAGDGVLQGDDIETLRKRERLLALAIAGSGTGIWDRNVVTGEIQY
SSGWKAMLGYADWEVSNRIEDSYQRLHPDDLDRVKATMQAHFEGRSDSYEVEHRIRCRDGSYKWICSRGRVVDRDASGRA
LRMVGTSTDITSQRAMSERLLEAVSLITNLTNEVPGLVFQYRSVPGGPSFFPYASAGITEIYELTPAQVAADASCIDALI
HPADLAAYRASFDASAAQLSPWHLEYRVQLPMQGLRWRQGDARPQRLPDGSILWHGFITDVTERKRIEAELQELATIDSL
TGLPNRRHFMAQIETRLASLQSGRGAATALMMCDLDHFKSINDRWGHGVGDRVLRHFGSILRAHLRPGDMAGRLGGEEFG
ILLDGADMRGAVGVARQIQQRIAEYPLIEHEQRIDLTVSIGIALMTAADANAEAPLSRSDLALYRAKKSGRNRIES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=36.1581920903955, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=35.6756756756757, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=37.037037037037, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87082007, Length=185, Percent_Identity=37.2972972972973, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87081881, Length=342, Percent_Identity=29.8245614035088, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=36.25, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1788085, Length=178, Percent_Identity=33.1460674157303, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI87081977, Length=187, Percent_Identity=33.1550802139037, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=34.3558282208589, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=30.6818181818182, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787802, Length=132, Percent_Identity=32.5757575757576, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=36.0248447204969, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=31.4102564102564, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 52730; Mature: 52730

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTRRRPISDVCMLAPPTSEDVPTASRSLAQSAEGRAGDGVLQGDDIETLRKRERLLALA
CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHEEEEE
IAGSGTGIWDRNVVTGEIQYSSGWKAMLGYADWEVSNRIEDSYQRLHPDDLDRVKATMQA
EECCCCCCCCCCEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
HFEGRSDSYEVEHRIRCRDGSYKWICSRGRVVDRDASGRALRMVGTSTDITSQRAMSERL
HCCCCCCCEEEEEEEEECCCCEEEEECCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHH
LEAVSLITNLTNEVPGLVFQYRSVPGGPSFFPYASAGITEIYELTPAQVAADASCIDALI
HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHH
HPADLAAYRASFDASAAQLSPWHLEYRVQLPMQGLRWRQGDARPQRLPDGSILWHGFITD
CHHHHHHHHHCCCCCHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEHHHHH
VTERKRIEAELQELATIDSLTGLPNRRHFMAQIETRLASLQSGRGAATALMMCDLDHFKS
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHEEECCHHHHC
INDRWGHGVGDRVLRHFGSILRAHLRPGDMAGRLGGEEFGILLDGADMRGAVGVARQIQQ
CHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHH
RIAEYPLIEHEQRIDLTVSIGIALMTAADANAEAPLSRSDLALYRAKKSGRNRIES
HHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYTRRRPISDVCMLAPPTSEDVPTASRSLAQSAEGRAGDGVLQGDDIETLRKRERLLALA
CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHEEEEE
IAGSGTGIWDRNVVTGEIQYSSGWKAMLGYADWEVSNRIEDSYQRLHPDDLDRVKATMQA
EECCCCCCCCCCEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
HFEGRSDSYEVEHRIRCRDGSYKWICSRGRVVDRDASGRALRMVGTSTDITSQRAMSERL
HCCCCCCCEEEEEEEEECCCCEEEEECCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHH
LEAVSLITNLTNEVPGLVFQYRSVPGGPSFFPYASAGITEIYELTPAQVAADASCIDALI
HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHH
HPADLAAYRASFDASAAQLSPWHLEYRVQLPMQGLRWRQGDARPQRLPDGSILWHGFITD
CHHHHHHHHHCCCCCHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEHHHHH
VTERKRIEAELQELATIDSLTGLPNRRHFMAQIETRLASLQSGRGAATALMMCDLDHFKS
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHEEECCHHHHC
INDRWGHGVGDRVLRHFGSILRAHLRPGDMAGRLGGEEFGILLDGADMRGAVGVARQIQQ
CHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHH
RIAEYPLIEHEQRIDLTVSIGIALMTAADANAEAPLSRSDLALYRAKKSGRNRIES
HHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]