Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 73540458

GI number: 73540458

Start: 817578

End: 818399

Strand: Reverse

Name: ycdC [C]

Synonym: Reut_A0754

Alternate gene names: 73540458

Gene position: 818399-817578 (Counterclockwise)

Preceding gene: 73540462

Following gene: 73540457

Centisome position: 21.5

GC content: 66.67

Gene sequence:

>822_bases
ATGGCAACCCCCGGCAAGACCACCGCCACGGATCACTCCGCTCCCCGCAAGGACACCGAAGCCCCCCGCTGGAGCCGGCG
CAAGGCCGCGCGCCCGCAGGAACTCGTCGCCGCGGCGCTCGACCTGTTCGTGGAGCGCGGTTTTGCGGCCACCCGCCTGG
AAGACGTGGCCGCCGCAGCCGGTGTCTCCAAGGGGACGGTGTACCTGTATTTCGCCAACAAGGAAGAACTGTTCAAGACC
GTGGTGCGAGAGAACCTCGTGCCCGCGCTCGCCCGGGGCACGGACCTGGTCGACCGGTTCGAAGGCACGACGCCGGAACT
GCTGCGCGAACTGCTGCGCGGCTGGTGGGGGCTGATCGGTGCCACGTCGGTGTCGGGGCTGACCAAGCTGATCATGGCGG
AGTCCGGCAACTTCCCCGACATCGCGCGCTTCTACCAGGAAGAAGTCATGGTGCCCGGAGACGAGCTGTTCACACGCGTA
CTGGCGCGCGGCGTCGAGCGCGGCGAGTTCCGCGCCCTGCCGCCAAACCCGACCACCACGCTGGTCTGTGCGCCGCTGGT
GTTCCTGATGCTGTGGCAACGCTCGTTCGGCCTCTATTCGCACAAGGAAATCGACCCGGATGCGTACCTCGACAACCTGC
TCGAGACGCTGCTGTTCGGCCTGACTGCCGGCGAAACACGTGACCGTCCGCTGCCCCCGAAGTCCGGACCCTACATCTGG
GAAAAGATCCGCGATGAAATGACTGCGCAGCGGCTGGGCCAGCGCACCGACGATCTCGACACGGTTGCCCCGGCGGCCAC
CGCACAACAAGACAAGACATGA

Upstream 100 bases:

>100_bases
GTTCGGGGCAGGGCGAACCCGAGTTGACCCCTGCAATATGGTCACCCTACATTACTGACCCATAAGTTATTAAAGCTTGC
GCCCCGCCGCTCATCCCATC

Downstream 100 bases:

>100_bases
AGCGAAACAAGAAGATCCTGATCGCCGTGCTTGGAGCCGTGGCGGTGCTGAGCGCAACGGCCGCCGTGCGCAAGGTCAGC
AGCGCGCGCCAGGCACCCAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; Transcription Regulator TetR Family; Transcriptional Regulator Protein Tetr/Acrr-Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulatory Protein; Regulatory Protein Tetr; TetR Family Transcriptional Regulatory Protein; Transcription Regulator Protein; TetR Family Transcription Regulator Protein; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator Protein; TRANSCRIPTIONal REGULATOR PROTEIN TetR/AcrR-Family

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MATPGKTTATDHSAPRKDTEAPRWSRRKAARPQELVAAALDLFVERGFAATRLEDVAAAAGVSKGTVYLYFANKEELFKT
VVRENLVPALARGTDLVDRFEGTTPELLRELLRGWWGLIGATSVSGLTKLIMAESGNFPDIARFYQEEVMVPGDELFTRV
LARGVERGEFRALPPNPTTTLVCAPLVFLMLWQRSFGLYSHKEIDPDAYLDNLLETLLFGLTAGETRDRPLPPKSGPYIW
EKIRDEMTAQRLGQRTDDLDTVAPAATAQQDKT

Sequences:

>Translated_273_residues
MATPGKTTATDHSAPRKDTEAPRWSRRKAARPQELVAAALDLFVERGFAATRLEDVAAAAGVSKGTVYLYFANKEELFKT
VVRENLVPALARGTDLVDRFEGTTPELLRELLRGWWGLIGATSVSGLTKLIMAESGNFPDIARFYQEEVMVPGDELFTRV
LARGVERGEFRALPPNPTTTLVCAPLVFLMLWQRSFGLYSHKEIDPDAYLDNLLETLLFGLTAGETRDRPLPPKSGPYIW
EKIRDEMTAQRLGQRTDDLDTVAPAATAQQDKT
>Mature_272_residues
ATPGKTTATDHSAPRKDTEAPRWSRRKAARPQELVAAALDLFVERGFAATRLEDVAAAAGVSKGTVYLYFANKEELFKTV
VRENLVPALARGTDLVDRFEGTTPELLRELLRGWWGLIGATSVSGLTKLIMAESGNFPDIARFYQEEVMVPGDELFTRVL
ARGVERGEFRALPPNPTTTLVCAPLVFLMLWQRSFGLYSHKEIDPDAYLDNLLETLLFGLTAGETRDRPLPPKSGPYIWE
KIRDEMTAQRLGQRTDDLDTVAPAATAQQDKT

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30311; Mature: 30180

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPGKTTATDHSAPRKDTEAPRWSRRKAARPQELVAAALDLFVERGFAATRLEDVAAAA
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
GVSKGTVYLYFANKEELFKTVVRENLVPALARGTDLVDRFEGTTPELLRELLRGWWGLIG
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHH
ATSVSGLTKLIMAESGNFPDIARFYQEEVMVPGDELFTRVLARGVERGEFRALPPNPTTT
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
LVCAPLVFLMLWQRSFGLYSHKEIDPDAYLDNLLETLLFGLTAGETRDRPLPPKSGPYIW
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
EKIRDEMTAQRLGQRTDDLDTVAPAATAQQDKT
HHHHHHHHHHHHCCCCCCHHHHCCHHCCCCCCC
>Mature Secondary Structure 
ATPGKTTATDHSAPRKDTEAPRWSRRKAARPQELVAAALDLFVERGFAATRLEDVAAAA
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
GVSKGTVYLYFANKEELFKTVVRENLVPALARGTDLVDRFEGTTPELLRELLRGWWGLIG
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHH
ATSVSGLTKLIMAESGNFPDIARFYQEEVMVPGDELFTRVLARGVERGEFRALPPNPTTT
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
LVCAPLVFLMLWQRSFGLYSHKEIDPDAYLDNLLETLLFGLTAGETRDRPLPPKSGPYIW
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
EKIRDEMTAQRLGQRTDDLDTVAPAATAQQDKT
HHHHHHHHHHHHCCCCCCHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA