Click here to switch to the map view.

The map label for this gene is ygaD [C]

Identifier: 73540314

GI number: 73540314

Start: 656209

End: 656988

Strand: Reverse

Name: ygaD [C]

Synonym: Reut_A0608

Alternate gene names: 73540314

Gene position: 656988-656209 (Counterclockwise)

Preceding gene: 73540315

Following gene: 73540313

Centisome position: 17.26

GC content: 65.38

Gene sequence:

>780_bases
ATGGATCCTATCGAGCAGACCGCCCGCTTTCTGCAGCGTCGGGGTCTGCGTCTTGCCACGGCCGAGTCGTGCACGGCCGG
ACTCATTGCCTCGCACATTGCCGATGTTCCCGGCTGCGGCAGCACACTGCAGTGTGCGGTCGTCGCCTATTCGCCCGAGG
CCAAGAAGCAGATCCTGGGTGTCAGCGCCGCGCTGATTGAACGCCACGGCCTGACCAGTGAAGCCGTGTCGCTGGCCATG
GCGCACGGCGTGATGGCGATCAGCCACGCCAATGTCGCCGTGGCCAACACCGGCGTTGCCGACGACGGCGCGCCGGACGG
CACGCCACCGGGCACGCAATGCTTCGCCTGGCTGATCCGGCTGCCCGGACGCGCCGCACTTGCGCACACCTTCACCGAGA
CACGACGCTTCCGCGGCAATCGCACCGATATCCGCCAGGCTGCCTCTGCGTGGGCTCTGCAGCGCATTCCGCACTACTAC
GCGCTGGCAACTTCTACCAGCCAGTCGCCCGATGCGAAGACCAACCTTACCGATATGCAGGAGCCAATCATGACTTCCAG
CAGTGGAACCCCCCGCGGCCAAACAGCGCCGGACGAAAACCCGCAAACCCCAACCCCTGAGACCATTGAAGTGAAAGTCT
CCGGCGAAGGCAACGGCCTGGTCGACGACGAGACATCGGGAAACATGGCATTGCCCGACCCCGGCAAGCCGGTCGGCAGC
CACAAGACGGCCAATGAGGCCAACGGTGGCGAAGGCGACGAGGACGCGACCAGCCAGTGA

Upstream 100 bases:

>100_bases
GCGCAATGTCAGGGGCTGAAGGCGTGTGACATGGCGCATCGCGGCCCGTGTCTGGCTCAAACCTTGCAGCAGTTAGCGGA
TCAGCCAAGCGGAGGAAGCG

Downstream 100 bases:

>100_bases
CGCTGCACGGAGGCACGACGCGGGCGTGAAGATCGACCGGGACCGCGATACCCGCCATGGCATGGCGGATGCATGAAGGA
TAAATATCGCGGGAGCTTCA

Product: CinA, C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MDPIEQTARFLQRRGLRLATAESCTAGLIASHIADVPGCGSTLQCAVVAYSPEAKKQILGVSAALIERHGLTSEAVSLAM
AHGVMAISHANVAVANTGVADDGAPDGTPPGTQCFAWLIRLPGRAALAHTFTETRRFRGNRTDIRQAASAWALQRIPHYY
ALATSTSQSPDAKTNLTDMQEPIMTSSSGTPRGQTAPDENPQTPTPETIEVKVSGEGNGLVDDETSGNMALPDPGKPVGS
HKTANEANGGEGDEDATSQ

Sequences:

>Translated_259_residues
MDPIEQTARFLQRRGLRLATAESCTAGLIASHIADVPGCGSTLQCAVVAYSPEAKKQILGVSAALIERHGLTSEAVSLAM
AHGVMAISHANVAVANTGVADDGAPDGTPPGTQCFAWLIRLPGRAALAHTFTETRRFRGNRTDIRQAASAWALQRIPHYY
ALATSTSQSPDAKTNLTDMQEPIMTSSSGTPRGQTAPDENPQTPTPETIEVKVSGEGNGLVDDETSGNMALPDPGKPVGS
HKTANEANGGEGDEDATSQ
>Mature_259_residues
MDPIEQTARFLQRRGLRLATAESCTAGLIASHIADVPGCGSTLQCAVVAYSPEAKKQILGVSAALIERHGLTSEAVSLAM
AHGVMAISHANVAVANTGVADDGAPDGTPPGTQCFAWLIRLPGRAALAHTFTETRRFRGNRTDIRQAASAWALQRIPHYY
ALATSTSQSPDAKTNLTDMQEPIMTSSSGTPRGQTAPDENPQTPTPETIEVKVSGEGNGLVDDETSGNMALPDPGKPVGS
HKTANEANGGEGDEDATSQ

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=163, Percent_Identity=36.8098159509202, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787818, Length=133, Percent_Identity=37.593984962406, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 27012; Mature: 27012

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPIEQTARFLQRRGLRLATAESCTAGLIASHIADVPGCGSTLQCAVVAYSPEAKKQILG
CCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHH
VSAALIERHGLTSEAVSLAMAHGVMAISHANVAVANTGVADDGAPDGTPPGTQCFAWLIR
HHHHHHHHCCCHHHHHHHHHHHHHHEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
LPGRAALAHTFTETRRFRGNRTDIRQAASAWALQRIPHYYALATSTSQSPDAKTNLTDMQ
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHH
EPIMTSSSGTPRGQTAPDENPQTPTPETIEVKVSGEGNGLVDDETSGNMALPDPGKPVGS
HHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCC
HKTANEANGGEGDEDATSQ
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDPIEQTARFLQRRGLRLATAESCTAGLIASHIADVPGCGSTLQCAVVAYSPEAKKQILG
CCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHH
VSAALIERHGLTSEAVSLAMAHGVMAISHANVAVANTGVADDGAPDGTPPGTQCFAWLIR
HHHHHHHHCCCHHHHHHHHHHHHHHEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
LPGRAALAHTFTETRRFRGNRTDIRQAASAWALQRIPHYYALATSTSQSPDAKTNLTDMQ
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHH
EPIMTSSSGTPRGQTAPDENPQTPTPETIEVKVSGEGNGLVDDETSGNMALPDPGKPVGS
HHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCC
HKTANEANGGEGDEDATSQ
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA