Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
---|---|
Accession | NC_007347 |
Length | 3,806,533 |
Click here to switch to the map view.
The map label for this gene is ybhO [H]
Identifier: 73540150
GI number: 73540150
Start: 487422
End: 488750
Strand: Direct
Name: ybhO [H]
Synonym: Reut_A0444
Alternate gene names: 73540150
Gene position: 487422-488750 (Clockwise)
Preceding gene: 73540148
Following gene: 73540151
Centisome position: 12.8
GC content: 68.25
Gene sequence:
>1329_bases ATGTCACGGATATCCGACACCGACCCACCGAATGCCGCACGATCCAACGGCGCGGCGCATGTTGCGGCGCGGGATGACAG CGCCGGTCCCGCAGCACGCGCGGGGCGGCGGCGTCTGCTGCGCTGGGCCGGACGGCACGGCAAGCCGGTCGGCGGCAATC AGGTAAGGCTGCTGTGCGGCGGGCGCGACTTCTTCCCAGCGCTGATCGAGGCGATCGACGCGGCGGTTCTCCAGGTCATC ATTGAAACCTACATCTACGCCGACGACGACGTCGGGCGCGCCGTCAGCGATGCGCTGATCCGGGCCGCGGCGCGTGGCGT AGCCGTGCGGCTGACCGTGGACGGTTTCGGTGCCGGCGACATGTCTGCCGAACTCATGCAGCGCCTGCGCGACGCGGGCG TGCAGCTGCGTGTCTACCGCGTGATGCGCGGCTTCCGGCTGGCGCGCAGGCACCTGCGCCGCCTGCACCGCAAGCTTGCC GTGGTCGACCGGCGCGTAGCGTTCGTAGGCGGCATCAACATCATCGACGACTACAATCACGGCCCGTTCGAGCAGGAGGG ACTCGGGGCACGCTACGACTTCGCCGTGGAAGTGCGCGGCCCGCTGGTCGACCGCATTGCGCTGACGGCGGAGCGCCTCT GGTGGCGGCTGTCGCTGCGCGCCGAACTGCATGACGTTGGTTTGGCGGGCGCGGCAGCGGGATACCCGCTTGTGACCGAC CTGCCGCCGCGGCGCGATACGGAAGGCGGCATGCGGGCGGCGCTTCTCCTCCGGGACAACTTGCGCAACCGCCGCACCAT CGAGCGCGAATATCTGCACGCGCTGGGTGCTGCGCGCGACGACGTGATTCTCGCCAACGCGTATTTCCTGCCGGGCCACA AGATGCGGCGCGCGCTGCTGGCCTGCCGCAAGCGCGGCGTGCGGGTACGATTGTTGTTGCAGGGTCGCGTCGAATACCGG CTGCAGCATTTCGCCACGCACGCGCTGTACGCGAGCTTGCTTGATGCCGGCATCGAGATCTACGAGTACGCGCAGAGCTT CCTGCACGCCAAGGTCGGTGTGGTGGATGAATCCTGGGCCACGGTCGGATCCAGCAATATGGATCCGTTCAGCCTGCTGC TCGCACGCGAGGCCAACGTCTGCGTCTATGATCCTGCCTTCGCCGCCGTCCTGCGCACGCAGCTGGAGCGCGCCATTGCC GAGCGCAGCGTGCGCGTTATGCCGGAGGCGCATGCCCGGCGCTCGGCGGTGCACCGTGTGGCGAACTGGGCCGCCTACAT GGTGTTGCGTCTTGGCGTCGTTATTGCCGGTGTGACGGGGCGCTATTGA
Upstream 100 bases:
>100_bases AATACCTTCACAGTGCTATCCCTTGGTGCATGAGTGATCGACGATAGCAGAGATGCACCGCCCCATGTGCAGATGGCGGC GTGTGTCCCATAATCGCATC
Downstream 100 bases:
>100_bases AACGGCACGCCGATATTGCCCCGCAGCATGACAGGGGCTGCGCGGCTGATGGCATCAGGCTGCGTGTTGATGTTGCAACG CAGTCGGTTTAGAAACGTGG
Product: phospholipase D/transphosphatidylase
Products: NA
Alternate protein names: CL synthase [H]
Number of amino acids: Translated: 442; Mature: 441
Protein sequence:
>442_residues MSRISDTDPPNAARSNGAAHVAARDDSAGPAARAGRRRLLRWAGRHGKPVGGNQVRLLCGGRDFFPALIEAIDAAVLQVI IETYIYADDDVGRAVSDALIRAAARGVAVRLTVDGFGAGDMSAELMQRLRDAGVQLRVYRVMRGFRLARRHLRRLHRKLA VVDRRVAFVGGINIIDDYNHGPFEQEGLGARYDFAVEVRGPLVDRIALTAERLWWRLSLRAELHDVGLAGAAAGYPLVTD LPPRRDTEGGMRAALLLRDNLRNRRTIEREYLHALGAARDDVILANAYFLPGHKMRRALLACRKRGVRVRLLLQGRVEYR LQHFATHALYASLLDAGIEIYEYAQSFLHAKVGVVDESWATVGSSNMDPFSLLLAREANVCVYDPAFAAVLRTQLERAIA ERSVRVMPEAHARRSAVHRVANWAAYMVLRLGVVIAGVTGRY
Sequences:
>Translated_442_residues MSRISDTDPPNAARSNGAAHVAARDDSAGPAARAGRRRLLRWAGRHGKPVGGNQVRLLCGGRDFFPALIEAIDAAVLQVI IETYIYADDDVGRAVSDALIRAAARGVAVRLTVDGFGAGDMSAELMQRLRDAGVQLRVYRVMRGFRLARRHLRRLHRKLA VVDRRVAFVGGINIIDDYNHGPFEQEGLGARYDFAVEVRGPLVDRIALTAERLWWRLSLRAELHDVGLAGAAAGYPLVTD LPPRRDTEGGMRAALLLRDNLRNRRTIEREYLHALGAARDDVILANAYFLPGHKMRRALLACRKRGVRVRLLLQGRVEYR LQHFATHALYASLLDAGIEIYEYAQSFLHAKVGVVDESWATVGSSNMDPFSLLLAREANVCVYDPAFAAVLRTQLERAIA ERSVRVMPEAHARRSAVHRVANWAAYMVLRLGVVIAGVTGRY >Mature_441_residues SRISDTDPPNAARSNGAAHVAARDDSAGPAARAGRRRLLRWAGRHGKPVGGNQVRLLCGGRDFFPALIEAIDAAVLQVII ETYIYADDDVGRAVSDALIRAAARGVAVRLTVDGFGAGDMSAELMQRLRDAGVQLRVYRVMRGFRLARRHLRRLHRKLAV VDRRVAFVGGINIIDDYNHGPFEQEGLGARYDFAVEVRGPLVDRIALTAERLWWRLSLRAELHDVGLAGAAAGYPLVTDL PPRRDTEGGMRAALLLRDNLRNRRTIEREYLHALGAARDDVILANAYFLPGHKMRRALLACRKRGVRVRLLLQGRVEYRL QHFATHALYASLLDAGIEIYEYAQSFLHAKVGVVDESWATVGSSNMDPFSLLLAREANVCVYDPAFAAVLRTQLERAIAE RSVRVMPEAHARRSAVHRVANWAAYMVLRLGVVIAGVTGRY
Specific function: Catalyzes, in vitro, the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol [H]
COG id: COG1502
COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PLD phosphodiesterase domains [H]
Homologues:
Organism=Escherichia coli, GI1787007, Length=396, Percent_Identity=35.8585858585859, Blast_Score=229, Evalue=3e-61, Organism=Escherichia coli, GI1787502, Length=384, Percent_Identity=26.8229166666667, Blast_Score=116, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001736 [H]
Pfam domain/function: PF00614 PLDc [H]
EC number: 2.7.8.-
Molecular weight: Translated: 48986; Mature: 48855
Theoretical pI: Translated: 10.69; Mature: 10.69
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRISDTDPPNAARSNGAAHVAARDDSAGPAARAGRRRLLRWAGRHGKPVGGNQVRLLCG CCCCCCCCCCCCHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC GRDFFPALIEAIDAAVLQVIIETYIYADDDVGRAVSDALIRAAARGVAVRLTVDGFGAGD CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC MSAELMQRLRDAGVQLRVYRVMRGFRLARRHLRRLHRKLAVVDRRVAFVGGINIIDDYNH HHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC GPFEQEGLGARYDFAVEVRGPLVDRIALTAERLWWRLSLRAELHDVGLAGAAAGYPLVTD CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC LPPRRDTEGGMRAALLLRDNLRNRRTIEREYLHALGAARDDVILANAYFLPGHKMRRALL CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHH ACRKRGVRVRLLLQGRVEYRLQHFATHALYASLLDAGIEIYEYAQSFLHAKVGVVDESWA HHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH TVGSSNMDPFSLLLAREANVCVYDPAFAAVLRTQLERAIAERSVRVMPEAHARRSAVHRV HCCCCCCCHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH ANWAAYMVLRLGVVIAGVTGRY HHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SRISDTDPPNAARSNGAAHVAARDDSAGPAARAGRRRLLRWAGRHGKPVGGNQVRLLCG CCCCCCCCCCCHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC GRDFFPALIEAIDAAVLQVIIETYIYADDDVGRAVSDALIRAAARGVAVRLTVDGFGAGD CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC MSAELMQRLRDAGVQLRVYRVMRGFRLARRHLRRLHRKLAVVDRRVAFVGGINIIDDYNH HHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC GPFEQEGLGARYDFAVEVRGPLVDRIALTAERLWWRLSLRAELHDVGLAGAAAGYPLVTD CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC LPPRRDTEGGMRAALLLRDNLRNRRTIEREYLHALGAARDDVILANAYFLPGHKMRRALL CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHH ACRKRGVRVRLLLQGRVEYRLQHFATHALYASLLDAGIEIYEYAQSFLHAKVGVVDESWA HHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH TVGSSNMDPFSLLLAREANVCVYDPAFAAVLRTQLERAIAERSVRVMPEAHARRSAVHRV HCCCCCCCHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH ANWAAYMVLRLGVVIAGVTGRY HHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]