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The map label for this gene is 73539885

Identifier: 73539885

GI number: 73539885

Start: 203391

End: 203990

Strand: Reverse

Name: 73539885

Synonym: Reut_A0179

Alternate gene names: NA

Gene position: 203990-203391 (Counterclockwise)

Preceding gene: 73539889

Following gene: 73539884

Centisome position: 5.36

GC content: 65.67

Gene sequence:

>600_bases
ATGCCTCACGACACCGCCGACCTTGAAACCCTTCGCCCCCACCTGCTGCGCTTCGCCCGGCTGCAATTGCGCGACGAGGC
GCTCGCGGAAGACGCGGTGTCCGACACGCTGCTGGCCGTGCTGGAGCACCCGGAGCGCTTTGCGGGGCAATCGGCGCTGA
AGACCTACCTGGTCGGCATCCTAAAACACAAGATCATCGACCTGCTGCGAAGCGGCCGGCGCGAGGTGCGGTTGGCGCTG
GCCACCGACGAGGACGGCGAAACCCAGTCGGAGCAAGACGCCTTTGACGCGCTGTTCACGCGCAACGGCCACTACCAGGA
CATGCCATCCGACTGGGGCAGCCCCGACCGGACGCTGGAGCGGCGCGAATTCTTCGAGATCCTGCAAGCCTGCGTCGACC
GCCTGCCCGCCAAGACGGCGCGTGTCTTCATGATGCGCGAGTGGCTGGAACTCGAGACCGAAGAAATCTGTCAGGATCTG
GAGGTCAGCGCGACCAATGTGTGGGTCATCCTGTACCGCGCCCGCATGCGCCTGCGCGAGTGCCTGGAACTGAACTGGTT
CGGGCACCAGCCCGGACTGACTACCGGCAAGACGCGGTGA

Upstream 100 bases:

>100_bases
TCACGGGGCCGGGCACAAGCCGGGCCGATGCGCATCGTGGCGCACGACACGGCGCCCCGGCGTCATCTTTGCGCAACACG
TCCGGACCAACGCCGCAGCG

Downstream 100 bases:

>100_bases
CCCGCCTGAAAGGAACCCATGTCTGATTCGCCCCGTCACCGCCTGCTGCCTGACTGCGAGGAGGTCCATCACCTGACCAT
GAAGGGAATGGACCGCCCCC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MPHDTADLETLRPHLLRFARLQLRDEALAEDAVSDTLLAVLEHPERFAGQSALKTYLVGILKHKIIDLLRSGRREVRLAL
ATDEDGETQSEQDAFDALFTRNGHYQDMPSDWGSPDRTLERREFFEILQACVDRLPAKTARVFMMREWLELETEEICQDL
EVSATNVWVILYRARMRLRECLELNWFGHQPGLTTGKTR

Sequences:

>Translated_199_residues
MPHDTADLETLRPHLLRFARLQLRDEALAEDAVSDTLLAVLEHPERFAGQSALKTYLVGILKHKIIDLLRSGRREVRLAL
ATDEDGETQSEQDAFDALFTRNGHYQDMPSDWGSPDRTLERREFFEILQACVDRLPAKTARVFMMREWLELETEEICQDL
EVSATNVWVILYRARMRLRECLELNWFGHQPGLTTGKTR
>Mature_198_residues
PHDTADLETLRPHLLRFARLQLRDEALAEDAVSDTLLAVLEHPERFAGQSALKTYLVGILKHKIIDLLRSGRREVRLALA
TDEDGETQSEQDAFDALFTRNGHYQDMPSDWGSPDRTLERREFFEILQACVDRLPAKTARVFMMREWLELETEEICQDLE
VSATNVWVILYRARMRLRECLELNWFGHQPGLTTGKTR

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23095; Mature: 22963

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHDTADLETLRPHLLRFARLQLRDEALAEDAVSDTLLAVLEHPERFAGQSALKTYLVGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LKHKIIDLLRSGRREVRLALATDEDGETQSEQDAFDALFTRNGHYQDMPSDWGSPDRTLE
HHHHHHHHHHCCHHHEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
RREFFEILQACVDRLPAKTARVFMMREWLELETEEICQDLEVSATNVWVILYRARMRLRE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
CLELNWFGHQPGLTTGKTR
HHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PHDTADLETLRPHLLRFARLQLRDEALAEDAVSDTLLAVLEHPERFAGQSALKTYLVGI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LKHKIIDLLRSGRREVRLALATDEDGETQSEQDAFDALFTRNGHYQDMPSDWGSPDRTLE
HHHHHHHHHHCCHHHEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
RREFFEILQACVDRLPAKTARVFMMREWLELETEEICQDLEVSATNVWVILYRARMRLRE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
CLELNWFGHQPGLTTGKTR
HHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]