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The map label for this gene is ywqA [H]

Identifier: 71911260

GI number: 71911260

Start: 1412038

End: 1413360

Strand: Reverse

Name: ywqA [H]

Synonym: M5005_Spy_1447

Alternate gene names: 71911260

Gene position: 1413360-1412038 (Counterclockwise)

Preceding gene: 71911261

Following gene: 71911259

Centisome position: 76.87

GC content: 41.57

Gene sequence:

>1323_bases
GTGAGACTGCACGAGTATCAGGAATACGCTAAGACATGGATAGTAGAGCACCCTTATTGCGGCCTTTTACTTGACATGGG
CCTTGGTAAAACGCTGACAACACTATCGGCGATAGATGAGATTCAAAATATTTTTTCCGAGGATCATAAGATTTTAATCG
TAGCCCCTAAAAAAGTGGCGGAAGAAACGTGGCCTACGGAGATTGAGAAATGGCATTTTGATTTCACCTACTCTAAAGTT
TTGGGGAGCGAGGGAAAACGAATTGAGGCGTTAGAAACAGAAGCTGATATCTATTTGATTAATCGTGAGAATGTTACCTG
GCTTGTTGAATACTACAAGACTAAATGGCCGTTTACCTTTGTGGTTATTGATGAGCTGTCAAGCTTTAAGTCTAGTAAGT
CAAAACGGTTTAGGGCTTTGCGAAAAGTTAGACCGAAAGTCCAACGCCTTGTAGGACTAACAGGAACCCCAGCGCCTAAC
AGTTTGATTGATTTGTGGCCGCAGATTTATCTGATGGACAGAGGCGACAGGCTTGAGACTAGCCAGACTCGATTTAAAGA
CAAGTATTTTGTTCCTGATAAGCGTAATGGTCCAATCATTTACAGTTGGGCGCTTAGGGATGGCGCAGAAGCAGAAATCT
ATAACAAGATTGAGGACATCTGTGTCAGCATGAAAGCTAAAGACTATCTCAAGTTACCGCCGCGAACCAACAACGTTGTA
TCAGTTAAGTTATCTAATATGAAAGCTTACAAACAGCTTGAAGCTGATTTGGTGTTGGAGTTTAAGGATAAGGAAATATC
TGCGGCTAACTCTGCGGTCTTGGCCAATAAATTACTTCAAATGGCTAATGGTGCTATCTATGATGATGATAAATCAACAG
TTGCTATACACGATGACAAACTTGACGCGCTTGAGGACATAGTAGAAGAAAGCCAAGGCCAGCCAATCTTAGTTTTTTAT
CAGTATCAACATGATTTTGAAAGACTTAAGAAACGATTCCCTCAGGCTGAAGAGTTGACGTCAGTTGACAAGTGGAATTC
CGGGAAAATACCAATTCTTCTGTGTCACCCTCAATCAGCTGGGCATGGGCTTAATCTACAAAAAGGCGGGCATATTATTG
TTTGGTTTGGGCTAACGTGGAGTCTTGAATATTATCAGCAAGCTAATGCCAGATTAGATAGACAAGGGCAGACAGAACCC
GTTATTGTGCACCACATTGTTGCAGAAAATACAGTTGATGAAAAAGTACTTAGGATTTTACAAGGCAAAGAAAAAAATCA
GAACGCCTTACTCGAAGCAGTTAAGGCGCAGTTAGGAGTCTAG

Upstream 100 bases:

>100_bases
TTGCAATGCACAAAAAAATAAAAGAGGCTGGGCAGCATGTTTGGGTTGTTGACTCCTACGAATCAGTGGACATGGCCTTA
AAAGAAATGGAGAACTGGGT

Downstream 100 bases:

>100_bases
ATGAAAAAAGAATATGTCGTTAGAATCTACACGGGTAGAGAAAAGAATTTTGAGGCAAAACCTCAGTTTGAAGAGAAAAC
CTTTACGCGAAAAGCGGACA

Product: phage-related DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MRLHEYQEYAKTWIVEHPYCGLLLDMGLGKTLTTLSAIDEIQNIFSEDHKILIVAPKKVAEETWPTEIEKWHFDFTYSKV
LGSEGKRIEALETEADIYLINRENVTWLVEYYKTKWPFTFVVIDELSSFKSSKSKRFRALRKVRPKVQRLVGLTGTPAPN
SLIDLWPQIYLMDRGDRLETSQTRFKDKYFVPDKRNGPIIYSWALRDGAEAEIYNKIEDICVSMKAKDYLKLPPRTNNVV
SVKLSNMKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAIYDDDKSTVAIHDDKLDALEDIVEESQGQPILVFY
QYQHDFERLKKRFPQAEELTSVDKWNSGKIPILLCHPQSAGHGLNLQKGGHIIVWFGLTWSLEYYQQANARLDRQGQTEP
VIVHHIVAENTVDEKVLRILQGKEKNQNALLEAVKAQLGV

Sequences:

>Translated_440_residues
MRLHEYQEYAKTWIVEHPYCGLLLDMGLGKTLTTLSAIDEIQNIFSEDHKILIVAPKKVAEETWPTEIEKWHFDFTYSKV
LGSEGKRIEALETEADIYLINRENVTWLVEYYKTKWPFTFVVIDELSSFKSSKSKRFRALRKVRPKVQRLVGLTGTPAPN
SLIDLWPQIYLMDRGDRLETSQTRFKDKYFVPDKRNGPIIYSWALRDGAEAEIYNKIEDICVSMKAKDYLKLPPRTNNVV
SVKLSNMKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAIYDDDKSTVAIHDDKLDALEDIVEESQGQPILVFY
QYQHDFERLKKRFPQAEELTSVDKWNSGKIPILLCHPQSAGHGLNLQKGGHIIVWFGLTWSLEYYQQANARLDRQGQTEP
VIVHHIVAENTVDEKVLRILQGKEKNQNALLEAVKAQLGV
>Mature_440_residues
MRLHEYQEYAKTWIVEHPYCGLLLDMGLGKTLTTLSAIDEIQNIFSEDHKILIVAPKKVAEETWPTEIEKWHFDFTYSKV
LGSEGKRIEALETEADIYLINRENVTWLVEYYKTKWPFTFVVIDELSSFKSSKSKRFRALRKVRPKVQRLVGLTGTPAPN
SLIDLWPQIYLMDRGDRLETSQTRFKDKYFVPDKRNGPIIYSWALRDGAEAEIYNKIEDICVSMKAKDYLKLPPRTNNVV
SVKLSNMKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAIYDDDKSTVAIHDDKLDALEDIVEESQGQPILVFY
QYQHDFERLKKRFPQAEELTSVDKWNSGKIPILLCHPQSAGHGLNLQKGGHIIVWFGLTWSLEYYQQANARLDRQGQTEP
VIVHHIVAENTVDEKVLRILQGKEKNQNALLEAVKAQLGV

Specific function: Unknown

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI164419749, Length=468, Percent_Identity=23.7179487179487, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI25144179, Length=484, Percent_Identity=23.9669421487603, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115534248, Length=298, Percent_Identity=26.8456375838926, Blast_Score=65, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6324879, Length=475, Percent_Identity=24.2105263157895, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR022138
- InterPro:   IPR000330 [H]

Pfam domain/function: PF12419 DUF3670; PF00271 Helicase_C; PF00176 SNF2_N [H]

EC number: NA

Molecular weight: Translated: 50616; Mature: 50616

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLHEYQEYAKTWIVEHPYCGLLLDMGLGKTLTTLSAIDEIQNIFSEDHKILIVAPKKVA
CCCHHHHHHHHHEECCCCCHHHHEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
EETWPTEIEKWHFDFTYSKVLGSEGKRIEALETEADIYLINRENVTWLVEYYKTKWPFTF
HCCCCCCHHHEEECEEHHHHHCCCCCEEEEEECCCCEEEEECCCCEEEEEEHHCCCCEEE
VVIDELSSFKSSKSKRFRALRKVRPKVQRLVGLTGTPAPNSLIDLWPQIYLMDRGDRLET
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCEEEEEECCCCCCC
SQTRFKDKYFVPDKRNGPIIYSWALRDGAEAEIYNKIEDICVSMKAKDYLKLPPRTNNVV
HHHHCCCCEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCEE
SVKLSNMKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAIYDDDKSTVAIHDDK
EEEECCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCH
LDALEDIVEESQGQPILVFYQYQHDFERLKKRFPQAEELTSVDKWNSGKIPILLCHPQSA
HHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEEECCCCC
GHGLNLQKGGHIIVWFGLTWSLEYYQQANARLDRQGQTEPVIVHHIVAENTVDEKVLRIL
CCCCEECCCCEEEEEEECEEEHHHHHHHCCCCCCCCCCCCEEEEEEHHCCCHHHHHHHHH
QGKEKNQNALLEAVKAQLGV
CCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLHEYQEYAKTWIVEHPYCGLLLDMGLGKTLTTLSAIDEIQNIFSEDHKILIVAPKKVA
CCCHHHHHHHHHEECCCCCHHHHEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
EETWPTEIEKWHFDFTYSKVLGSEGKRIEALETEADIYLINRENVTWLVEYYKTKWPFTF
HCCCCCCHHHEEECEEHHHHHCCCCCEEEEEECCCCEEEEECCCCEEEEEEHHCCCCEEE
VVIDELSSFKSSKSKRFRALRKVRPKVQRLVGLTGTPAPNSLIDLWPQIYLMDRGDRLET
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCEEEEEECCCCCCC
SQTRFKDKYFVPDKRNGPIIYSWALRDGAEAEIYNKIEDICVSMKAKDYLKLPPRTNNVV
HHHHCCCCEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCEE
SVKLSNMKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAIYDDDKSTVAIHDDK
EEEECCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCH
LDALEDIVEESQGQPILVFYQYQHDFERLKKRFPQAEELTSVDKWNSGKIPILLCHPQSA
HHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEEECCCCC
GHGLNLQKGGHIIVWFGLTWSLEYYQQANARLDRQGQTEPVIVHHIVAENTVDEKVLRIL
CCCCEECCCCEEEEEEECEEEHHHHHHHCCCCCCCCCCCCEEEEEEHHCCCHHHHHHHHH
QGKEKNQNALLEAVKAQLGV
CCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9353933 [H]