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The map label for this gene is rbsR [H]

Identifier: 71911078

GI number: 71911078

Start: 1220035

End: 1220265

Strand: Reverse

Name: rbsR [H]

Synonym: M5005_Spy_1265

Alternate gene names: 71911078

Gene position: 1220265-1220035 (Counterclockwise)

Preceding gene: 71911079

Following gene: 71911077

Centisome position: 66.37

GC content: 35.93

Gene sequence:

>231_bases
TTGAGATTGAAAAATCCCCATAAACTTATTTTACAAGGAGGTAAGGCTATGGTAACCATTAAACAAGTTGCTGAAGAAGC
AGGTGTTTCTAGATCAACAGTCTCCAGGTATATTTCTCAAAAAGGATATGTATCTGATGATGCAAGGCATAAAATCAAAG
CAGCGATAGCAAAATTACATTACACTCCAAATGTCTTGGCGCAGTCATTGAAGACGAAAAAAATCAACTAG

Upstream 100 bases:

>100_bases
CAAGAACTTGCGCAGATAATCATGAGTCCATTCCATGACTCTATTATTCTGGAAAGCCTTGCAATAGACAAGTTAACGTT
ATAACAACTAAATTAAAAAC

Downstream 100 bases:

>100_bases
TCGGTTTATTATTACCAGACATTTCCAATCCTTTTTTTCCGAGGTTAGCAAGAGGAGCAGAAGAATATTTAAAAGAAAAG
GGGTATCGGGTTATGCTAGG

Product: ribose operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MRLKNPHKLILQGGKAMVTIKQVAEEAGVSRSTVSRYISQKGYVSDDARHKIKAAIAKLHYTPNVLAQSLKTKKIN

Sequences:

>Translated_76_residues
MRLKNPHKLILQGGKAMVTIKQVAEEAGVSRSTVSRYISQKGYVSDDARHKIKAAIAKLHYTPNVLAQSLKTKKIN
>Mature_76_residues
MRLKNPHKLILQGGKAMVTIKQVAEEAGVSRSTVSRYISQKGYVSDDARHKIKAAIAKLHYTPNVLAQSLKTKKIN

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 8430; Mature: 8430

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKNPHKLILQGGKAMVTIKQVAEEAGVSRSTVSRYISQKGYVSDDARHKIKAAIAKLH
CCCCCCHHHEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
YTPNVLAQSLKTKKIN
CCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLKNPHKLILQGGKAMVTIKQVAEEAGVSRSTVSRYISQKGYVSDDARHKIKAAIAKLH
CCCCCCHHHEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
YTPNVLAQSLKTKKIN
CCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]