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The map label for this gene is rbsR [H]

Identifier: 71911077

GI number: 71911077

Start: 1219241

End: 1219942

Strand: Reverse

Name: rbsR [H]

Synonym: M5005_Spy_1264

Alternate gene names: 71911077

Gene position: 1219942-1219241 (Counterclockwise)

Preceding gene: 71911078

Following gene: 71911076

Centisome position: 66.35

GC content: 37.89

Gene sequence:

>702_bases
ATGCTAGGAAATATTTCAGACAGCGAAGCTCTTGAAGAAGAATACGTCCATGTCCTTCTTCAAAGCAATGCTGCTGGCAT
TATTACTACCCATGACTTTACAAAGCGGTATCCTACTCTTGCTATTCCAGTTGTAGTGGTAGATCGTGTTGACCAAGAGA
CCCAGTACGGTGTCTTTTCAGATAATAGGACAGGGGGCTTATTGGCGGCTCAGACTGTCTGGCAAGCAGGGGCAAAAGAA
GTTTTGTTAATAAGAGGTCCGCTGGATAATGCTGAAAACATTAATGAGCGGTTTGAAGCTAGTTTTTCTTACCTTCAAAA
ACAAGACGTGACTATGTATGTGTGTGATAGTCAGAATTTTGATTTTGAAAGTATTCAGCTAGAAGCTAGTTACAACCTCA
AGTGTTACCCAACAATAGACAGTATTATAGCACCTTCTGATATCCATGCTATTGCTTATATTCATGAACTGCATTCTCAA
GGTAAAAAGATTCCTCAAGATGTTCAAATAATAGGTTATGATGACATTTTAATGAGTCAATTTATTTATCCTTCTTTATC
GACTATTCATCAATCCTCTTATTTGATGGGCCGTTATGCCGCCGAATTAGTTTATACTATTGCTAGTCAATTAACTGTGA
AAGCAAATCGGATTAAATTGCCTGTTCACTACGTTGAGCGAGAAACAATAAGGAAAAGATAA

Upstream 100 bases:

>100_bases
TCAACTAGTCGGTTTATTATTACCAGACATTTCCAATCCTTTTTTTCCGAGGTTAGCAAGAGGAGCAGAAGAATATTTAA
AAGAAAAGGGGTATCGGGTT

Downstream 100 bases:

>100_bases
GTAATAATATTAGTCCAGATTTTAGCAGGTATGATGAAGATTTATTGGGATTTACCTTCTACTTTAAAAGAAGTTATCTG
TCATTACTTTCATCGCTATC

Product: ribose operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MLGNISDSEALEEEYVHVLLQSNAAGIITTHDFTKRYPTLAIPVVVVDRVDQETQYGVFSDNRTGGLLAAQTVWQAGAKE
VLLIRGPLDNAENINERFEASFSYLQKQDVTMYVCDSQNFDFESIQLEASYNLKCYPTIDSIIAPSDIHAIAYIHELHSQ
GKKIPQDVQIIGYDDILMSQFIYPSLSTIHQSSYLMGRYAAELVYTIASQLTVKANRIKLPVHYVERETIRKR

Sequences:

>Translated_233_residues
MLGNISDSEALEEEYVHVLLQSNAAGIITTHDFTKRYPTLAIPVVVVDRVDQETQYGVFSDNRTGGLLAAQTVWQAGAKE
VLLIRGPLDNAENINERFEASFSYLQKQDVTMYVCDSQNFDFESIQLEASYNLKCYPTIDSIIAPSDIHAIAYIHELHSQ
GKKIPQDVQIIGYDDILMSQFIYPSLSTIHQSSYLMGRYAAELVYTIASQLTVKANRIKLPVHYVERETIRKR
>Mature_233_residues
MLGNISDSEALEEEYVHVLLQSNAAGIITTHDFTKRYPTLAIPVVVVDRVDQETQYGVFSDNRTGGLLAAQTVWQAGAKE
VLLIRGPLDNAENINERFEASFSYLQKQDVTMYVCDSQNFDFESIQLEASYNLKCYPTIDSIIAPSDIHAIAYIHELHSQ
GKKIPQDVQIIGYDDILMSQFIYPSLSTIHQSSYLMGRYAAELVYTIASQLTVKANRIKLPVHYVERETIRKR

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=238, Percent_Identity=26.4705882352941, Blast_Score=77, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 26369; Mature: 26369

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGNISDSEALEEEYVHVLLQSNAAGIITTHDFTKRYPTLAIPVVVVDRVDQETQYGVFS
CCCCCCCHHHHHHHHHHHHEECCCCEEEEECHHHHCCCCEEEEEEEEECCCCCCCCCEEC
DNRTGGLLAAQTVWQAGAKEVLLIRGPLDNAENINERFEASFSYLQKQDVTMYVCDSQNF
CCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
DFESIQLEASYNLKCYPTIDSIIAPSDIHAIAYIHELHSQGKKIPQDVQIIGYDDILMSQ
CCEEEEEEECCCEEEEECHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH
FIYPSLSTIHQSSYLMGRYAAELVYTIASQLTVKANRIKLPVHYVERETIRKR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEECHHHHHHHHHHCC
>Mature Secondary Structure
MLGNISDSEALEEEYVHVLLQSNAAGIITTHDFTKRYPTLAIPVVVVDRVDQETQYGVFS
CCCCCCCHHHHHHHHHHHHEECCCCEEEEECHHHHCCCCEEEEEEEEECCCCCCCCCEEC
DNRTGGLLAAQTVWQAGAKEVLLIRGPLDNAENINERFEASFSYLQKQDVTMYVCDSQNF
CCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
DFESIQLEASYNLKCYPTIDSIIAPSDIHAIAYIHELHSQGKKIPQDVQIIGYDDILMSQ
CCEEEEEEECCCEEEEECHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH
FIYPSLSTIHQSSYLMGRYAAELVYTIASQLTVKANRIKLPVHYVERETIRKR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]