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The map label for this gene is dnaD [H]

Identifier: 71911022

GI number: 71911022

Start: 1171217

End: 1171606

Strand: Reverse

Name: dnaD [H]

Synonym: M5005_Spy_1209

Alternate gene names: 71911022

Gene position: 1171606-1171217 (Counterclockwise)

Preceding gene: 71911023

Following gene: 71911021

Centisome position: 63.72

GC content: 35.64

Gene sequence:

>390_bases
ATGACTAAAAAAGAACTTTTTGAAAATTTTCAGAAGAATTGGATGAGGCTTCTTTCGCCGTTTGAAATAGAGGATATCGA
TAAATGGATAGATGAAGACAATATGCCTGTAGAAGTTGTTAATGAAGCGTTGAAAGAAACAGTTATATACAACGCACCGA
ACCTTAGATACTTAAACAGAGTTCTAAACAATTGGAAGCGGCAAGGGATTGATACAGTCGAGAAAGTCGAATTTGCTAGA
TTGCAATTTGAGAATAAAAAGCTCAGTCAAAATAAAAATCAACAATCCAACGTCCCTAGCTGGTCCAATCCAGACTACAA
AGAACCAGATTTAAAAGAATTTGCTCTAGGAAGCATGGACGGTATAGAAGATGGATCAGGAGATTTTTAA

Upstream 100 bases:

>100_bases
GTAAAACGTAACACTAATAATTACTAACTTATAAATAAATACTAAATAACAATAAATACTAACAGATAATAAGATGATGC
TGCTAGAAGGGAGTCGATAA

Downstream 100 bases:

>100_bases
TTTTTTTAACAAACAAATCAAAAAAGATTTTGGTAAAACGGCGAGTAAAGAGACTTTTGCTAAGTTTGCTAGTTACTGCG
CCGAAGGAATCGAAAAAAAT

Product: DNA replication protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MTKKELFENFQKNWMRLLSPFEIEDIDKWIDEDNMPVEVVNEALKETVIYNAPNLRYLNRVLNNWKRQGIDTVEKVEFAR
LQFENKKLSQNKNQQSNVPSWSNPDYKEPDLKEFALGSMDGIEDGSGDF

Sequences:

>Translated_129_residues
MTKKELFENFQKNWMRLLSPFEIEDIDKWIDEDNMPVEVVNEALKETVIYNAPNLRYLNRVLNNWKRQGIDTVEKVEFAR
LQFENKKLSQNKNQQSNVPSWSNPDYKEPDLKEFALGSMDGIEDGSGDF
>Mature_128_residues
TKKELFENFQKNWMRLLSPFEIEDIDKWIDEDNMPVEVVNEALKETVIYNAPNLRYLNRVLNNWKRQGIDTVEKVEFARL
QFENKKLSQNKNQQSNVPSWSNPDYKEPDLKEFALGSMDGIEDGSGDF

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 15233; Mature: 15102

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKELFENFQKNWMRLLSPFEIEDIDKWIDEDNMPVEVVNEALKETVIYNAPNLRYLNR
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
VLNNWKRQGIDTVEKVEFARLQFENKKLSQNKNQQSNVPSWSNPDYKEPDLKEFALGSMD
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
GIEDGSGDF
CCCCCCCCC
>Mature Secondary Structure 
TKKELFENFQKNWMRLLSPFEIEDIDKWIDEDNMPVEVVNEALKETVIYNAPNLRYLNR
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
VLNNWKRQGIDTVEKVEFARLQFENKKLSQNKNQQSNVPSWSNPDYKEPDLKEFALGSMD
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
GIEDGSGDF
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]