Click here to switch to the map view.

The map label for this gene is ymdB [C]

Identifier: 71910743

GI number: 71910743

Start: 919972

End: 920784

Strand: Reverse

Name: ymdB [C]

Synonym: M5005_Spy_0930

Alternate gene names: 71910743

Gene position: 920784-919972 (Counterclockwise)

Preceding gene: 71910744

Following gene: 71910742

Centisome position: 50.08

GC content: 40.84

Gene sequence:

>813_bases
ATGCCTAGTTCATTTGATTTATTAGGGGAAATGATTGGTCTGTTGCAAACAGAGCAGCTTACTAGTTCTTGGGCCTGTCC
CTTGCCTAATGCTTTAACAAAGCGACAAGACTTGTGGCGGGCGCTCATTAACCAGCGCCCTGCTTTGCCCTTATCAAAAG
ATTACTTGAATCTGGAAGATGCTTATCTAGATGATTGGCGTGCTTCTTTTGTTCCTGTATCAGTCAAGGATTGCCAAAAA
ACTAATTATACCAGTCTTTTTCTTTACCATGGGGATATTAGGTATCTTGCTGTGGATGCTATTGTCAACGCTGCTAATAG
TGAGTTATTGGGATGTTTTAGTCCTAACCATGGCTGTATTGATAATGCGATTCATACGTTTGCCGGAAGTCGTTTACGCT
TAGCTTGTCAGGCAATCATGACTGAACAAGGCCGTAAGGAAGCCATTGGACAAGCAAAGCTTACCAGTGCTTATCATCTA
CCAGCCTCTTATATTATTCATACCGTAGGGCCAAGAATTACCAAAGGACACCACGTTTCTCCGATTCGAGCTGATTTGTT
AGCACGTTGTTATCGTTCTAGTCTTGATTTGGCGGTTAAAGCAGGATTGACTAGCCTAGCTTTTTGCTCTATTTCAACAG
GAGAATTTGGCTTTCCTAAAAAAGAAGCCGCTCAGATTGCTATTAAGACAGTTTTAAAATGGCAAGCAGAACATCCAGAA
TCTAAGACCTTAACTACCATTTTTAATACCTTTACATCAGAAGACAAGGCCTTATACGACACTTATTTGCAAAAGGAGAA
TAACTGTGAGTAA

Upstream 100 bases:

>100_bases
GCCACACTAACACCAACCCTTTTGAATTCAGAAAAAGCTGAGGAAAATTGGATTGTTGTGCTAACAGATGTTGATCAAGC
AGCTTTTGATGCCCTAGAAG

Downstream 100 bases:

>100_bases
TTGGACAACCTATCCTCAGAAAAACCTCACCCAGGCAGAACAACTGGCCCAATTAATCAAAGAAGCAGATGCACTTGTAG
TTGGTATTGGAGCTGGCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MPSSFDLLGEMIGLLQTEQLTSSWACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASFVPVSVKDCQK
TNYTSLFLYHGDIRYLAVDAIVNAANSELLGCFSPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHL
PASYIIHTVGPRITKGHHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPE
SKTLTTIFNTFTSEDKALYDTYLQKENNCE

Sequences:

>Translated_270_residues
MPSSFDLLGEMIGLLQTEQLTSSWACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASFVPVSVKDCQK
TNYTSLFLYHGDIRYLAVDAIVNAANSELLGCFSPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHL
PASYIIHTVGPRITKGHHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPE
SKTLTTIFNTFTSEDKALYDTYLQKENNCE
>Mature_269_residues
PSSFDLLGEMIGLLQTEQLTSSWACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASFVPVSVKDCQKT
NYTSLFLYHGDIRYLAVDAIVNAANSELLGCFSPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLP
ASYIIHTVGPRITKGHHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPES
KTLTTIFNTFTSEDKALYDTYLQKENNCE

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=250, Percent_Identity=35.6, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI13569840, Length=228, Percent_Identity=38.5964912280702, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI8923143, Length=156, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI207450721, Length=156, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI154813199, Length=134, Percent_Identity=37.3134328358209, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1787283, Length=187, Percent_Identity=38.5026737967914, Blast_Score=105, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17538214, Length=180, Percent_Identity=40, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24586353, Length=157, Percent_Identity=30.5732484076433, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 30018; Mature: 29886

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSFDLLGEMIGLLQTEQLTSSWACPLPNALTKRQDLWRALINQRPALPLSKDYLNLED
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHH
AYLDDWRASFVPVSVKDCQKTNYTSLFLYHGDIRYLAVDAIVNAANSELLGCFSPNHGCI
HHHHHHHHCEECEEHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCHH
DNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGHHVS
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCC
PIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPE
HHHHHHHHHHHHHCCCHHHHHCCHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
SKTLTTIFNTFTSEDKALYDTYLQKENNCE
CHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PSSFDLLGEMIGLLQTEQLTSSWACPLPNALTKRQDLWRALINQRPALPLSKDYLNLED
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHH
AYLDDWRASFVPVSVKDCQKTNYTSLFLYHGDIRYLAVDAIVNAANSELLGCFSPNHGCI
HHHHHHHHCEECEEHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCHH
DNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGHHVS
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCC
PIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPE
HHHHHHHHHHHHHCCCHHHHHCCHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
SKTLTTIFNTFTSEDKALYDTYLQKENNCE
CHHHHHHHHHHCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11917108 [H]