Definition | Streptococcus pyogenes MGAS5005 chromosome, complete genome. |
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Accession | NC_007297 |
Length | 1,838,554 |
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The map label for this gene is xerS
Identifier: 71910726
GI number: 71910726
Start: 899125
End: 900039
Strand: Reverse
Name: xerS
Synonym: M5005_Spy_0913
Alternate gene names: 71910726
Gene position: 900039-899125 (Counterclockwise)
Preceding gene: 71910728
Following gene: 71910724
Centisome position: 48.95
GC content: 38.69
Gene sequence:
>915_bases ATGGATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTT AGAGGCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTA TTAATCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTAT TTTTATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCA GAAACTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTG CCAAATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCT GAAGCAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGA TTCAGTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAA AACAGGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTT GGCAAGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGC TACTAAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCA ATGATGAGCAAAAAAATGCTTTAGATAACCTTTAA
Upstream 100 bases:
>100_bases GTATGTTTTAGATTATTACCAATCCAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACA AACGCTTTTTTGATTGGCTG
Downstream 100 bases:
>100_bases TGTTACATAATTGTTTTTATGTAACATTAAAGATAAAAATAGCTTCAAAATTAACTTTAATAGATGGCTACTATTAACCG TGACAGTTTGGTGTCAGGCC
Product: site-specific tyrosine recombinase XerS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPY FYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMV GKYSEDFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL
Sequences:
>Translated_304_residues MDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPY FYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMV GKYSEDFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL >Mature_304_residues MDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPY FYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMV GKYSEDFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL
Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division
COG id: COG0582
COG function: function code L; Integrase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'phage' integrase family. XerS subfamily
Homologues:
Organism=Escherichia coli, GI1790244, Length=251, Percent_Identity=27.0916334661355, Blast_Score=75, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): XERS_STRP1 (P67634)
Other databases:
- EMBL: AE004092 - EMBL: CP000017 - RefSeq: NP_269337.1 - RefSeq: YP_282276.1 - ProteinModelPortal: P67634 - SMR: P67634 - EnsemblBacteria: EBSTRT00000001626 - EnsemblBacteria: EBSTRT00000027474 - GeneID: 3572005 - GeneID: 901303 - GenomeReviews: AE004092_GR - GenomeReviews: CP000017_GR - KEGG: spy:SPy_1196 - KEGG: spz:M5005_Spy_0913 - GeneTree: EBGT00050000027386 - HOGENOM: HBG515070 - OMA: YDDMRRE - ProtClustDB: PRK05084 - BioCyc: SPYO160490:SPY1196-MONOMER - BioCyc: SPYO293653:M5005_SPY0913-MONOMER - GO: GO:0005737 - HAMAP: MF_01816 - InterPro: IPR011010 - InterPro: IPR013762 - InterPro: IPR002104 - InterPro: IPR023109 - InterPro: IPR004107 - Gene3D: G3DSA:1.10.150.130 - Gene3D: G3DSA:1.10.443.10
Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz
EC number: NA
Molecular weight: Translated: 34833; Mature: 34833
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: ACT_SITE 210-210 ACT_SITE 234-234 ACT_SITE 306-306 ACT_SITE 309-309 ACT_SITE 332-332 ACT_SITE 341-341
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYSTKEGLSQTTINRTLSA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH LSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETLAFLD HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH YVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVI HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCEEECCCHHHHHHHH RKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMV HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH GKYSEDFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNA HCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHH LDNL CCCC >Mature Secondary Structure MDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYSTKEGLSQTTINRTLSA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH LSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETLAFLD HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH YVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVI HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCEEECCCHHHHHHHH RKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMV HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH GKYSEDFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNA HCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHH LDNL CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11296296