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The map label for this gene is potD [C]

Identifier: 71910599

GI number: 71910599

Start: 790376

End: 791422

Strand: Direct

Name: potD [C]

Synonym: M5005_Spy_0786

Alternate gene names: 71910599

Gene position: 790376-791422 (Clockwise)

Preceding gene: 71910598

Following gene: 71910600

Centisome position: 42.99

GC content: 38.78

Gene sequence:

>1047_bases
ATGTTAAAACTCAAACGCAAATGGCTATTAAGCTTTTTGTTAGTAATAATTATTCTAGCAATCGTTAACGTTGCAATGTA
TATATTCTCATCGTCAAAAAAAGATAGTGCTAAAGAATTAGTTATCTTGACTCCTAATAGCCAAACTATTTTAACAGGGA
CTATTCCAGCCTTTGAGGAAAAGTATGGGGTTAAAGTAAGATTAATCCAAGGTGGGACGGGCCAACTTATTGATCAATTA
GGTCGAAAAGATAAACCATTAAACGCTGATATTTTCTTTGGTGGCAATTACACTCAATTTGAAAGCCATAAAGATTTATT
TGAATCTTATGTTTCTCCGCAGGTTTCTACTGTCATTTCAGATTACCAATTGCCTAGTCATCGCGCAACCCCATATACGA
TCAATGGCAGTGTACTGATTGTTAATAACGAATTAGCAAGAGGACTTCATATTACCAGTTATGAGGATTTGCTACAACCA
GCTTTAAAAGGCAAAATTGCTTTTGCTGATCCCAACAGTTCATCAAGTGCCTTCTCACAGCTGACTAATATATTGTTAGC
TAAGGGGGGGTACACAAACGCTGACGCTTGGGCTTACATGAAGCGCTTGTTGGTCAATATGAATTCTATTAGGGCTACGA
GTTCTTCAGAAGTCTATCAATCTGTCGCTGAGGGTAAGATGATTGTTGGGCTAACCTACGAAGATCCTTGTATCAACCTG
CAAAAAAGTGGTGCCAATGTTTCCATTGTTTATCCAAAAGAAGGAACGGTGTTTGTGCCCTCCTCTGTTGCTATTATCAA
ACATGCGCCAAACATGACAGAGGCTAAGCTCTTTATTAATTTTATGTTATCACGTGATGTGCAAAATGCCTTTGGCCAAT
CAACCAGTAACCGACCCATTCGTCAAGATGCCCAAACCAGTCACGACATGAAAGCCTTAGAAACGATAGCTACTTTGAAA
GAGGATTATGCTTATGTTACCAAGCACAAGAAAAAAATAGTGGCTACGTACAACCAGTTGCGCCAACGGTTGGTAAAAGC
TAAGTAG

Upstream 100 bases:

>100_bases
ACTATCGCTATTTTGATAGGGTTTTTAAAAAGTATCTAGGACAAACTGTAAAGGCTTTTAAAGAAGAGCATTTTATGAAA
GATACCGATAGGAGTAAGCC

Downstream 100 bases:

>100_bases
GAGTTAAAAGTATGGTATTGTCAACTTGAAAAAGGTCCTAAGGCCTTTTTTCTATGTTATAATTAAGAATCATCTTCAGT
TGAGAAAGTAAGGATTATGC

Product: iron(III)-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MLKLKRKWLLSFLLVIIILAIVNVAMYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQL
GRKDKPLNADIFFGGNYTQFESHKDLFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQP
ALKGKIAFADPNSSSSAFSQLTNILLAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINL
QKSGANVSIVYPKEGTVFVPSSVAIIKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLK
EDYAYVTKHKKKIVATYNQLRQRLVKAK

Sequences:

>Translated_348_residues
MLKLKRKWLLSFLLVIIILAIVNVAMYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQL
GRKDKPLNADIFFGGNYTQFESHKDLFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQP
ALKGKIAFADPNSSSSAFSQLTNILLAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINL
QKSGANVSIVYPKEGTVFVPSSVAIIKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLK
EDYAYVTKHKKKIVATYNQLRQRLVKAK
>Mature_348_residues
MLKLKRKWLLSFLLVIIILAIVNVAMYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQL
GRKDKPLNADIFFGGNYTQFESHKDLFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQP
ALKGKIAFADPNSSSSAFSQLTNILLAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINL
QKSGANVSIVYPKEGTVFVPSSVAIIKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLK
EDYAYVTKHKKKIVATYNQLRQRLVKAK

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: COG1840

COG function: function code P; ABC-type Fe3+ transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787367, Length=161, Percent_Identity=26.7080745341615, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 38641; Mature: 38641

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLKRKWLLSFLLVIIILAIVNVAMYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCCHHH
KYGVKVRLIQGGTGQLIDQLGRKDKPLNADIFFGGNYTQFESHKDLFESYVSPQVSTVIS
CCCCEEEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHH
DYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQ
HCCCCCCCCCCEEECCEEEEEECHHHCCEECCCHHHHHHHHHCCEEEEECCCCCHHHHHH
LTNILLAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCE
QKSGANVSIVYPKEGTVFVPSSVAIIKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPI
ECCCCEEEEEECCCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RQDAQTSHDMKALETIATLKEDYAYVTKHKKKIVATYNQLRQRLVKAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKLKRKWLLSFLLVIIILAIVNVAMYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCCHHH
KYGVKVRLIQGGTGQLIDQLGRKDKPLNADIFFGGNYTQFESHKDLFESYVSPQVSTVIS
CCCCEEEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHH
DYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQ
HCCCCCCCCCCEEECCEEEEEECHHHCCEECCCHHHHHHHHHCCEEEEECCCCCHHHHHH
LTNILLAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCE
QKSGANVSIVYPKEGTVFVPSSVAIIKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPI
ECCCCEEEEEECCCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RQDAQTSHDMKALETIATLKEDYAYVTKHKKKIVATYNQLRQRLVKAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]