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The map label for this gene is cpsY [C]

Identifier: 71910514

GI number: 71910514

Start: 703722

End: 704576

Strand: Reverse

Name: cpsY [C]

Synonym: M5005_Spy_0701

Alternate gene names: 71910514

Gene position: 704576-703722 (Counterclockwise)

Preceding gene: 71910523

Following gene: 71910507

Centisome position: 38.32

GC content: 40.12

Gene sequence:

>855_bases
ATGAATGAAGCTGCTAAGCAATTATTTATCACACAACCAAGTCTATCCAATGCGGTCAAGGATTTGGAAATGGAGATGGG
CATTACCATTTTCAACCGAAATCCTAAAGGGATCACCTTGACAAAAGATGGGGTGGAATTTTTATCTTATGCTCGCCAAA
TTATAGAGCAAACATCACTGTTAGAAGACCGCTATAAAAACCACAATACTGGCCGAGAGCTCTTTAGCGTTTCATCTCAA
CATTATGCCTTCGTAGTCAATGCATTTGTCTCACTCCTCAAGCGGACCGACATGACTCGGTATGAACTCTTTTTGCGCGA
GACAAGAACTTGGGAAATCATTGATGATGTCAAAAACTTTCGATCTGAAATTGGTGTTCTCTTTATCAACGACTATAACC
GAGATGTCTTGACCAAATTATTTGATGACAATCATTTGACCGCCTCTCCATTATTTAAGGCACAGCCTCATATTTTTGTC
AGCAAATCAAATCCTCTAGCAACTAAAAGCCTATTAAGCATGGACGACTTGAGAGATTTTCCTTACCTGAGCTATGACCA
AGGGATTCACAACTCCTTTTATTTTTCAGAAGAGATGATGTCCCAGATGCCCCACAACAAATCAATTGTGGTCAGTGACC
GTGCCACCCTCTTTAACTTAATGATTGGTTTAGATGGCTACACCGTTGCCAGTGGTATTCTAAATAGCAATCTAAATGGT
GACCAGATTGTGGCTATCCCGCTAGATGTCCCTGACGAAATTGACATTGTTTTTATCAAGCATGAAAAAGCCAACTTGTC
CAAAATGGGGGAACGTTTTATCGAATACCTTCTCGAAGAAGTAACCTTTGATTAA

Upstream 100 bases:

>100_bases
GATGACGTTTGTGCTTGCGTCTTTATTTTTTTTGAGCTAGACTGTACTTATGAGAATTCAACAACTGCATTATATTATCA
AAATTGTTGAGTGCGGCTCT

Downstream 100 bases:

>100_bases
TGTCTTTTTCAATCGTCATACTAAAAAACACGGTAGTAAGACCTGTATCGGTCAAGTTATCGTGTTTTTTGATAAATATC
AGACAATAGATTGTCTCCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; LysR Family Regulatory Protein; Transcriptional Regulator CpsY; Regulatory Protein; LysR-Type Transcriptional Regulator; Transcription Regulator; Transcriptional Regulator MarR Family; HTH-Type Transcriptional Regulator CmhR; MarR Family Transcriptional Regulator; HTH-Type Transcriptional Regulator AbgR; HTH-Type Transcriptional Regulator FhuR; LysR Family Regulator; Hydrogen Peroxide-Inducible Genes Activator; LysR Family Transcription Regulator; Fhu Operon Transcription Regulator

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MNEAAKQLFITQPSLSNAVKDLEMEMGITIFNRNPKGITLTKDGVEFLSYARQIIEQTSLLEDRYKNHNTGRELFSVSSQ
HYAFVVNAFVSLLKRTDMTRYELFLRETRTWEIIDDVKNFRSEIGVLFINDYNRDVLTKLFDDNHLTASPLFKAQPHIFV
SKSNPLATKSLLSMDDLRDFPYLSYDQGIHNSFYFSEEMMSQMPHNKSIVVSDRATLFNLMIGLDGYTVASGILNSNLNG
DQIVAIPLDVPDEIDIVFIKHEKANLSKMGERFIEYLLEEVTFD

Sequences:

>Translated_284_residues
MNEAAKQLFITQPSLSNAVKDLEMEMGITIFNRNPKGITLTKDGVEFLSYARQIIEQTSLLEDRYKNHNTGRELFSVSSQ
HYAFVVNAFVSLLKRTDMTRYELFLRETRTWEIIDDVKNFRSEIGVLFINDYNRDVLTKLFDDNHLTASPLFKAQPHIFV
SKSNPLATKSLLSMDDLRDFPYLSYDQGIHNSFYFSEEMMSQMPHNKSIVVSDRATLFNLMIGLDGYTVASGILNSNLNG
DQIVAIPLDVPDEIDIVFIKHEKANLSKMGERFIEYLLEEVTFD
>Mature_284_residues
MNEAAKQLFITQPSLSNAVKDLEMEMGITIFNRNPKGITLTKDGVEFLSYARQIIEQTSLLEDRYKNHNTGRELFSVSSQ
HYAFVVNAFVSLLKRTDMTRYELFLRETRTWEIIDDVKNFRSEIGVLFINDYNRDVLTKLFDDNHLTASPLFKAQPHIFV
SKSNPLATKSLLSMDDLRDFPYLSYDQGIHNSFYFSEEMMSQMPHNKSIVVSDRATLFNLMIGLDGYTVASGILNSNLNG
DQIVAIPLDVPDEIDIVFIKHEKANLSKMGERFIEYLLEEVTFD

Specific function: May Be An Accessory Regulatory Protein Within The Cys Regulon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788296, Length=199, Percent_Identity=27.6381909547739, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32665; Mature: 32665

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEAAKQLFITQPSLSNAVKDLEMEMGITIFNRNPKGITLTKDGVEFLSYARQIIEQTSL
CCHHHHEEEEECCCHHHHHHHHHHHCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH
LEDRYKNHNTGRELFSVSSQHYAFVVNAFVSLLKRTDMTRYELFLRETRTWEIIDDVKNF
HHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
RSEIGVLFINDYNRDVLTKLFDDNHLTASPLFKAQPHIFVSKSNPLATKSLLSMDDLRDF
HHHCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCC
PYLSYDQGIHNSFYFSEEMMSQMPHNKSIVVSDRATLFNLMIGLDGYTVASGILNSNLNG
CCCCCCCCCCCCEEECHHHHHHCCCCCEEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCC
DQIVAIPLDVPDEIDIVFIKHEKANLSKMGERFIEYLLEEVTFD
CEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNEAAKQLFITQPSLSNAVKDLEMEMGITIFNRNPKGITLTKDGVEFLSYARQIIEQTSL
CCHHHHEEEEECCCHHHHHHHHHHHCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH
LEDRYKNHNTGRELFSVSSQHYAFVVNAFVSLLKRTDMTRYELFLRETRTWEIIDDVKNF
HHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
RSEIGVLFINDYNRDVLTKLFDDNHLTASPLFKAQPHIFVSKSNPLATKSLLSMDDLRDF
HHHCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCC
PYLSYDQGIHNSFYFSEEMMSQMPHNKSIVVSDRATLFNLMIGLDGYTVASGILNSNLNG
CCCCCCCCCCCCEEECHHHHHHCCCCCEEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCC
DQIVAIPLDVPDEIDIVFIKHEKANLSKMGERFIEYLLEEVTFD
CEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA