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The map label for this gene is rplW [H]

Identifier: 71893544

GI number: 71893544

Start: 210968

End: 211471

Strand: Reverse

Name: rplW [H]

Synonym: MHJ_0188

Alternate gene names: 71893544

Gene position: 211471-210968 (Counterclockwise)

Preceding gene: 71893545

Following gene: 71893543

Centisome position: 23.56

GC content: 28.77

Gene sequence:

>504_bases
ATGAATGTAAATGAAATAATAAAAGGTCCAATTTTAACTGAAAAATCTTATCAATTAATGTCTAGTGGCGTTTATTCTTT
TAAAGTTAGTCCAAAAACTAACCGTTCTGAGACAAAAAAAGCAGTTGAATACATTTTTAATGTAAAAGTTGAAAAGGTAA
ATATTTTTACTGTCCCAAAAAAAGAAAAAAAACTAGGAAAATCAAAAGGGTTTACTACCAAATATAAAAAGGCGCTTGTA
AAATTGATGCCCGGTTATACAATTAATCTTTTTGAAGACGAAAGTCCTCAAGATCAAAAAGATTCTGAAACTGTAAGCGA
AAATACTGAAGAAAAAGCAAAAATTGCCAAGAAAAAAGCCGAATTAGAGGCTAAAAACAAAGAGATTGCAGAGAAATTAG
CTAAAAAACAAGCCGAATTAGCAAAAAAAGATTCTGAAACTAACGAAAATCAAGAAAAAAGGATTGAAAATCAAACCGAA
AACCAGGAAAATAGTGCTAATTAA

Upstream 100 bases:

>100_bases
GGTAAAAACGAATTCGCTAACAGTTGAATCACTAATTAAGGCCGATTTGTTAATAATTTCCAAAAATGAAATTACTAATT
TGGAGAAGAGAATCTAAAAA

Downstream 100 bases:

>100_bases
GGCCGAGCCGGAAAATATTTCAAAGAAAAGAAAACACAAAAACTAAAAAAGACCAAAAAAATGTCTAGTTTAGCGCTCGG
AAAAATAAAGACAAAAAAAT

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MNVNEIIKGPILTEKSYQLMSSGVYSFKVSPKTNRSETKKAVEYIFNVKVEKVNIFTVPKKEKKLGKSKGFTTKYKKALV
KLMPGYTINLFEDESPQDQKDSETVSENTEEKAKIAKKKAELEAKNKEIAEKLAKKQAELAKKDSETNENQEKRIENQTE
NQENSAN

Sequences:

>Translated_167_residues
MNVNEIIKGPILTEKSYQLMSSGVYSFKVSPKTNRSETKKAVEYIFNVKVEKVNIFTVPKKEKKLGKSKGFTTKYKKALV
KLMPGYTINLFEDESPQDQKDSETVSENTEEKAKIAKKKAELEAKNKEIAEKLAKKQAELAKKDSETNENQEKRIENQTE
NQENSAN
>Mature_167_residues
MNVNEIIKGPILTEKSYQLMSSGVYSFKVSPKTNRSETKKAVEYIFNVKVEKVNIFTVPKKEKKLGKSKGFTTKYKKALV
KLMPGYTINLFEDESPQDQKDSETVSENTEEKAKIAKKKAELEAKNKEIAEKLAKKQAELAKKDSETNENQEKRIENQTE
NQENSAN

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome [H]

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR013025 [H]

Pfam domain/function: PF00276 Ribosomal_L23 [H]

EC number: NA

Molecular weight: Translated: 19040; Mature: 19040

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNEIIKGPILTEKSYQLMSSGVYSFKVSPKTNRSETKKAVEYIFNVKVEKVNIFTVPK
CCHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCEEEEEEEEECCC
KEKKLGKSKGFTTKYKKALVKLMPGYTINLFEDESPQDQKDSETVSENTEEKAKIAKKKA
HHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHH
ELEAKNKEIAEKLAKKQAELAKKDSETNENQEKRIENQTENQENSAN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNVNEIIKGPILTEKSYQLMSSGVYSFKVSPKTNRSETKKAVEYIFNVKVEKVNIFTVPK
CCHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCEEEEEEEEECCC
KEKKLGKSKGFTTKYKKALVKLMPGYTINLFEDESPQDQKDSETVSENTEEKAKIAKKKA
HHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHH
ELEAKNKEIAEKLAKKQAELAKKDSETNENQEKRIENQTENQENSAN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA