Definition | Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome. |
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Accession | NC_007292 |
Length | 791,654 |
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The map label for this gene is nrdB [H]
Identifier: 71892252
GI number: 71892252
Start: 593153
End: 594283
Strand: Direct
Name: nrdB [H]
Synonym: BPEN_495
Alternate gene names: 71892252
Gene position: 593153-594283 (Clockwise)
Preceding gene: 71892251
Following gene: 71892253
Centisome position: 74.93
GC content: 32.1
Gene sequence:
>1131_bases ATGATTTATACAACTTTTTCTCAAAATAAAAATAATCAACTGCTCGAACCGATGTTTTTAGGACAACCAGTAAATATCGC TCGATTTGATCAACAAAAACATTCCATTTTCGAAAAATTAATTGAAAAACAACTTTCGTTCTTTTGGCGCCCAGAAGAAA TAGATATTTCTAAAGACCGTATAGATTTTCAATCATTACCAGACCATGAAAAACACATTTTTATTAGCAATTTAAAATAC CAAACTTTATTAGATTCTATTCAAGGACGCAGTCCCAATATTGCATTATTACCATTAATTTCTATACCAGAACTGGAAAT TTGGGTAGAAACTTGGTCATTTTTTGAAACCATTCACTCCCGTTCCTACACCCATATTATTCGTAATATTGTTAATCACC CATCTTTGATATTTGATGATATTATCAGCAACAAAGAAATTTTAAAACGTGCTAAAGATATTTCGACGTACTATGATAAT TTAATTGAATTAACCAGTTATTATCATATCTTAGGCCCCGGTATTCATCAAATCAATAATAACACTGTCGCAGTAAACTT ACATGAACTTAAAAAGAAATTATATTTATGTTTGATTAGCGTTAACGTCCTAGAAGCTATTCGTTTTTATGTCAGCTTTG CCTGTTCTTTTGCATTTGCTGAACGAGAACTCATGGAAGGTAATGCAAAAATTATACGACTTATAGCACGTGACGAAGCT TTGCATTTAAACGCTACTCAACATATTTTAAACTTAATGCGCTCTGGATCAGATGATCCAGAAATGGCCGATATCAGTAC AGAATGCCAACAAGAAAGTTATGCGCTGTTTTTAATGGCTGCAGAACAAGAAAAAAATTGGGCTAACTATTTATTTAAAG ATGGCTCTATGATAGGTTTAAATAAAGATATACTTTGTCAATATATTGAATATATTACCAATATACGCATGCAAGCAATC GGGCTAAGAACACCCTTCAACATTAAATCTAACGTGATACCATGGATTAATTCTTGGTTATCATCAGATAATGTTCAAGT GGCGCCACAAGAAGTAGAAGCCAGTTCTTATCTAGTAGGCCAAATAGATCCTAATATTGACGAAAATGAATTTCATGACT TTCAATTGTAA
Upstream 100 bases:
>100_bases ATAACCAATCAAATATTTGTACAAGTGATGCTTGTACAATTTAGAAAAGTAACTACTATTTACTAAAACCTACATATTTA TTTTTAAAAAAGGAATAAAA
Downstream 100 bases:
>100_bases AATATTTTTTCTTCAAAAAAAATATTTAAATATACAATTTGCGCATAACAACAGAATGTATCGTTCCTTATTAGAAGCAT TGGAAATGCATCATATACCA
Product: ribonucleotide-diphosphate reductase subunit beta
Products: NA
Alternate protein names: Protein B2; Protein R2; Ribonucleotide reductase 1 [H]
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MIYTTFSQNKNNQLLEPMFLGQPVNIARFDQQKHSIFEKLIEKQLSFFWRPEEIDISKDRIDFQSLPDHEKHIFISNLKY QTLLDSIQGRSPNIALLPLISIPELEIWVETWSFFETIHSRSYTHIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDN LIELTSYYHILGPGIHQINNNTVAVNLHELKKKLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEA LHLNATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEKNWANYLFKDGSMIGLNKDILCQYIEYITNIRMQAI GLRTPFNIKSNVIPWINSWLSSDNVQVAPQEVEASSYLVGQIDPNIDENEFHDFQL
Sequences:
>Translated_376_residues MIYTTFSQNKNNQLLEPMFLGQPVNIARFDQQKHSIFEKLIEKQLSFFWRPEEIDISKDRIDFQSLPDHEKHIFISNLKY QTLLDSIQGRSPNIALLPLISIPELEIWVETWSFFETIHSRSYTHIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDN LIELTSYYHILGPGIHQINNNTVAVNLHELKKKLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEA LHLNATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEKNWANYLFKDGSMIGLNKDILCQYIEYITNIRMQAI GLRTPFNIKSNVIPWINSWLSSDNVQVAPQEVEASSYLVGQIDPNIDENEFHDFQL >Mature_376_residues MIYTTFSQNKNNQLLEPMFLGQPVNIARFDQQKHSIFEKLIEKQLSFFWRPEEIDISKDRIDFQSLPDHEKHIFISNLKY QTLLDSIQGRSPNIALLPLISIPELEIWVETWSFFETIHSRSYTHIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDN LIELTSYYHILGPGIHQINNNTVAVNLHELKKKLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEA LHLNATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEKNWANYLFKDGSMIGLNKDILCQYIEYITNIRMQAI GLRTPFNIKSNVIPWINSWLSSDNVQVAPQEVEASSYLVGQIDPNIDENEFHDFQL
Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. R2 contains the tyrosyl radical required for catalysis [H]
COG id: COG0208
COG function: function code F; Ribonucleotide reductase, beta subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]
Homologues:
Organism=Escherichia coli, GI1788567, Length=376, Percent_Identity=78.1914893617021, Blast_Score=642, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009078 - InterPro: IPR012348 - InterPro: IPR000358 [H]
Pfam domain/function: PF00268 Ribonuc_red_sm [H]
EC number: =1.17.4.1 [H]
Molecular weight: Translated: 43712; Mature: 43712
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYTTFSQNKNNQLLEPMFLGQPVNIARFDQQKHSIFEKLIEKQLSFFWRPEEIDISKDR CEEEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC IDFQSLPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELEIWVETWSFFETIHS CCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC RSYTHIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDNLIELTSYYHILGPGIHQINN CHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECC NTVAVNLHELKKKLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEA CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCE LHLNATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEKNWANYLFKDGSMIGL EECCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHCCCCCEECC NKDILCQYIEYITNIRMQAIGLRTPFNIKSNVIPWINSWLSSDNVQVAPQEVEASSYLVG CHHHHHHHHHHHHCCHHHEEECCCCCCCCCCCHHHHHHHHCCCCCEECHHHHCCCCEEEE QIDPNIDENEFHDFQL CCCCCCCCCCCCCCCC >Mature Secondary Structure MIYTTFSQNKNNQLLEPMFLGQPVNIARFDQQKHSIFEKLIEKQLSFFWRPEEIDISKDR CEEEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC IDFQSLPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELEIWVETWSFFETIHS CCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC RSYTHIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDNLIELTSYYHILGPGIHQINN CHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECC NTVAVNLHELKKKLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEA CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCE LHLNATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEKNWANYLFKDGSMIGL EECCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHCCCCCEECC NKDILCQYIEYITNIRMQAIGLRTPFNIKSNVIPWINSWLSSDNVQVAPQEVEASSYLVG CHHHHHHHHHHHHCCHHHEEECCCCCCCCCCCHHHHHHHHCCCCCEECHHHHCCCCEEEE QIDPNIDENEFHDFQL CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]