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The map label for this gene is ybeY [C]

Identifier: 71892097

GI number: 71892097

Start: 385169

End: 385642

Strand: Reverse

Name: ybeY [C]

Synonym: BPEN_324

Alternate gene names: 71892097

Gene position: 385642-385169 (Counterclockwise)

Preceding gene: 71892098

Following gene: 71892096

Centisome position: 48.71

GC content: 32.07

Gene sequence:

>474_bases
ATGACGAGTAACCAAGTAATTATCGATTTACAATTAGCATGTAAAAATTTACATGGATTACCTAATCGGAAAATGTTTCA
GTCGTGGGTATCTGCTATATTTTCTATATATAAAAAAAAAATAGAATTAACTGTACGTATAGTAGATATAAAAGAGATGC
ACTATTTAAATTGGTATTATTTAAAAAAAGATTGCCCTACTAATGTTTTATCATTTCCTTTTACGCCGCCATTGGGAATG
AAATCCCCATTACTTGGTGATGTAGTGCTTTGTCGCCAGATCATAGAATACGAATCTAAAGAAAAAAATGTACCTGGTAG
ATCACATTGGGCGCATATGATAATTCATGGGTCACTACATTTGTTAGGGTACAATCATATTGTGGACAAAGAAGCTATAT
TAATGCAACGAGTAGAAAGAAATATACTTCAGAAATGTGGATATCGAACGTGTTGTCATGTTGCACATAGATAA

Upstream 100 bases:

>100_bases
TAAGATATACAGATATACATGAGAGTAATTGTAAATTAAAGTATAAATAAAACAAATAGTAGCGATTAATAATAATTATT
ATTATGACTAAGGATAATAG

Downstream 100 bases:

>100_bases
TAAAATTTTTATAAGATATAATAAATAATATTATGAATAACAATAATTCAGAGGAGAACGTTAATTCTATTCGTAAAAAA
AGTTTTTTCACCTTTATATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTSNQVIIDLQLACKNLHGLPNRKMFQSWVSAIFSIYKKKIELTVRIVDIKEMHYLNWYYLKKDCPTNVLSFPFTPPLGM
KSPLLGDVVLCRQIIEYESKEKNVPGRSHWAHMIIHGSLHLLGYNHIVDKEAILMQRVERNILQKCGYRTCCHVAHR

Sequences:

>Translated_157_residues
MTSNQVIIDLQLACKNLHGLPNRKMFQSWVSAIFSIYKKKIELTVRIVDIKEMHYLNWYYLKKDCPTNVLSFPFTPPLGM
KSPLLGDVVLCRQIIEYESKEKNVPGRSHWAHMIIHGSLHLLGYNHIVDKEAILMQRVERNILQKCGYRTCCHVAHR
>Mature_156_residues
TSNQVIIDLQLACKNLHGLPNRKMFQSWVSAIFSIYKKKIELTVRIVDIKEMHYLNWYYLKKDCPTNVLSFPFTPPLGMK
SPLLGDVVLCRQIIEYESKEKNVPGRSHWAHMIIHGSLHLLGYNHIVDKEAILMQRVERNILQKCGYRTCCHVAHR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=146, Percent_Identity=52.0547945205479, Blast_Score=164, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BLOPB (Q492Z0)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277827.1
- ProteinModelPortal:   Q492Z0
- SMR:   Q492Z0
- STRING:   Q492Z0
- GeneID:   3562836
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_324
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- ProtClustDB:   CLSK2411640
- BioCyc:   CBLO291272:BPEN_324-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18347; Mature: 18216

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNQVIIDLQLACKNLHGLPNRKMFQSWVSAIFSIYKKKIELTVRIVDIKEMHYLNWYY
CCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHEEEEEE
LKKDCPTNVLSFPFTPPLGMKSPLLGDVVLCRQIIEYESKEKNVPGRSHWAHMIIHGSLH
EECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEECCEE
LLGYNHIVDKEAILMQRVERNILQKCGYRTCCHVAHR
EEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure 
TSNQVIIDLQLACKNLHGLPNRKMFQSWVSAIFSIYKKKIELTVRIVDIKEMHYLNWYY
CCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHEEEEEE
LKKDCPTNVLSFPFTPPLGMKSPLLGDVVLCRQIIEYESKEKNVPGRSHWAHMIIHGSLH
EECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEECCEE
LLGYNHIVDKEAILMQRVERNILQKCGYRTCCHVAHR
EEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA