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The map label for this gene is ygfA [C]

Identifier: 71892038

GI number: 71892038

Start: 300664

End: 301275

Strand: Reverse

Name: ygfA [C]

Synonym: BPEN_264

Alternate gene names: 71892038

Gene position: 301275-300664 (Counterclockwise)

Preceding gene: 71892039

Following gene: 71892033

Centisome position: 38.06

GC content: 30.07

Gene sequence:

>612_bases
ATGTATCTTGATGATAAAAAATCACACAGAAAATTTCTTCGTATGTATATACGAAGAATACGTAGAACTTTAACGTTTCA
AGAACAATATACAGCGGCACAGTTAATAACTAACAAAATTATGACTATAAATCATATACGTAGATCAACACGTATAGCGG
CGTTTATTGCTTTTGATGGAGAAATAAATACTACTTTGCTCATTAAAGCTTTGTTATTGATGCATAAACAGATATATTTA
CCAATTCTGATTGATTCAGGGTCTAAATGCTTGTTGTTTTCAAGATATACATTTGCAACACCTCTTATATGCAATCATTT
AAATATATATGAACCGAAATGGAATGTTCGTTCTGTTATTCCTATAGAAAAAATAGATGTTGTATTTGTTCCATTAGTCG
CATTTGATAGTAGTGGAAATCGATTAGGAATGGGTGGTGGTTTTTATGATAGAACTTTACAAAACTGGAAACATCAAAGT
AATTATATACCTATAGGATTAGCACATGATTTTCAAAAAATACCTACCCAATTGCTTCCTATGGAAACATGGGATATAAT
GTTACCAGAAATTATCACTCCATCTTATCATTTGATTGTAGATACTCATTAA

Upstream 100 bases:

>100_bases
GTCAGAATAACGAATGTAGATAAGCAAACATAGTTAACACTATTTTCAGGACAAACAGCGTATAAATATGCTGTATTTAT
ATCAATGAATTCAATCTAAT

Downstream 100 bases:

>100_bases
AAATACTTTGAGAAATATTGTTGTTTGTAATATTTAGTTTTGTGATAATCACATTTTTTGAATACGGATAAAAGTTTTAT
ATATTCTCAACAATTAATAT

Product: putative ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MYLDDKKSHRKFLRMYIRRIRRTLTFQEQYTAAQLITNKIMTINHIRRSTRIAAFIAFDGEINTTLLIKALLLMHKQIYL
PILIDSGSKCLLFSRYTFATPLICNHLNIYEPKWNVRSVIPIEKIDVVFVPLVAFDSSGNRLGMGGGFYDRTLQNWKHQS
NYIPIGLAHDFQKIPTQLLPMETWDIMLPEIITPSYHLIVDTH

Sequences:

>Translated_203_residues
MYLDDKKSHRKFLRMYIRRIRRTLTFQEQYTAAQLITNKIMTINHIRRSTRIAAFIAFDGEINTTLLIKALLLMHKQIYL
PILIDSGSKCLLFSRYTFATPLICNHLNIYEPKWNVRSVIPIEKIDVVFVPLVAFDSSGNRLGMGGGFYDRTLQNWKHQS
NYIPIGLAHDFQKIPTQLLPMETWDIMLPEIITPSYHLIVDTH
>Mature_203_residues
MYLDDKKSHRKFLRMYIRRIRRTLTFQEQYTAAQLITNKIMTINHIRRSTRIAAFIAFDGEINTTLLIKALLLMHKQIYL
PILIDSGSKCLLFSRYTFATPLICNHLNIYEPKWNVRSVIPIEKIDVVFVPLVAFDSSGNRLGMGGGFYDRTLQNWKHQS
NYIPIGLAHDFQKIPTQLLPMETWDIMLPEIITPSYHLIVDTH

Specific function: Unknown

COG id: COG0212

COG function: function code H; 5-formyltetrahydrofolate cyclo-ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 5-formyltetrahydrofolate cyclo-ligase family [H]

Homologues:

Organism=Homo sapiens, GI5453746, Length=206, Percent_Identity=23.3009708737864, Blast_Score=70, Evalue=9e-13,
Organism=Escherichia coli, GI1789278, Length=179, Percent_Identity=46.3687150837989, Blast_Score=167, Evalue=6e-43,
Organism=Caenorhabditis elegans, GI17510857, Length=204, Percent_Identity=28.4313725490196, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002698 [H]

Pfam domain/function: PF01812 5-FTHF_cyc-lig [H]

EC number: NA

Molecular weight: Translated: 23737; Mature: 23737

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLDDKKSHRKFLRMYIRRIRRTLTFQEQYTAAQLITNKIMTINHIRRSTRIAAFIAFDG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECC
EINTTLLIKALLLMHKQIYLPILIDSGSKCLLFSRYTFATPLICNHLNIYEPKWNVRSVI
CCCHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECCHHHCHHHHCCCEEECCCCCCEEEC
PIEKIDVVFVPLVAFDSSGNRLGMGGGFYDRTLQNWKHQSNYIPIGLAHDFQKIPTQLLP
CHHHCCEEEEEEEEECCCCCEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHCCHHHCC
METWDIMLPEIITPSYHLIVDTH
CCHHHHHHHHHCCCCEEEEEECC
>Mature Secondary Structure
MYLDDKKSHRKFLRMYIRRIRRTLTFQEQYTAAQLITNKIMTINHIRRSTRIAAFIAFDG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECC
EINTTLLIKALLLMHKQIYLPILIDSGSKCLLFSRYTFATPLICNHLNIYEPKWNVRSVI
CCCHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECCHHHCHHHHCCCEEECCCCCCEEEC
PIEKIDVVFVPLVAFDSSGNRLGMGGGFYDRTLQNWKHQSNYIPIGLAHDFQKIPTQLLP
CHHHCCEEEEEEEEECCCCCEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHCCHHHCC
METWDIMLPEIITPSYHLIVDTH
CCHHHHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]