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The map label for this gene is yqgF [C]

Identifier: 71892031

GI number: 71892031

Start: 291941

End: 292375

Strand: Reverse

Name: yqgF [C]

Synonym: BPEN_257

Alternate gene names: 71892031

Gene position: 292375-291941 (Counterclockwise)

Preceding gene: 71892032

Following gene: 71892030

Centisome position: 36.93

GC content: 33.79

Gene sequence:

>435_bases
ATGCGTGATGTCAATTGTGTCGGCATAGTTATGGGTTTTGATTTTGGTACTAAGCACATAGGAGTAGCTATTGGTCAGAA
ATTGACTTGTACTGCACAACCTCTGACTGTATTGCAGTCGCAATCTGGTGTTCCTAATTGGAAGCGTATCCGAGATATTT
ATAATACGTGGAAACCAATGATTTTTGTAGTAGGATTACCTTTAAAAATAGATGGTAGCGAACAACCTATTACAATTTTA
GCAAAGATATTTGCCATTCAACTCAAAGAACTGTTTCCAGTTCCAGTAAAAATGCATGATGAGCGTTTTAGTACAAGTGA
AGCACGTTTAAACTATTTTAAATATTATCATGATGATTTATGTGCTAGATCGAATATTAAAATCAATGCAATTGCAGCTG
GAGTAATTTTAAAAAGTTGGTTAAACAAATCTTAA

Upstream 100 bases:

>100_bases
AATGAAACAATTTTATTTCATACTCCTATTATTGATCGTTGGCGCGCAGCTGCAAAAATATTAGGAATTGATATTTATAA
TATTGCTGATCAGACAGGTC

Downstream 100 bases:

>100_bases
GTACAAAAAAATAATATTTCCTATATAAATAGGATAAAAAATAATAACTAAGTATTAGAAATAATATTAATTATGATAAT
AATGTTCAAATTTTAAAATT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MRDVNCVGIVMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPMIFVVGLPLKIDGSEQPITIL
AKIFAIQLKELFPVPVKMHDERFSTSEARLNYFKYYHDDLCARSNIKINAIAAGVILKSWLNKS

Sequences:

>Translated_144_residues
MRDVNCVGIVMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPMIFVVGLPLKIDGSEQPITIL
AKIFAIQLKELFPVPVKMHDERFSTSEARLNYFKYYHDDLCARSNIKINAIAAGVILKSWLNKS
>Mature_144_residues
MRDVNCVGIVMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPMIFVVGLPLKIDGSEQPITIL
AKIFAIQLKELFPVPVKMHDERFSTSEARLNYFKYYHDDLCARSNIKINAIAAGVILKSWLNKS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=137, Percent_Identity=43.0656934306569, Blast_Score=124, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BLOPB (Q493F4)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277761.1
- ProteinModelPortal:   Q493F4
- SMR:   Q493F4
- STRING:   Q493F4
- GeneID:   3562899
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_257
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   WQPDALV
- ProtClustDB:   PRK00109
- BioCyc:   CBLO291272:BPEN_257-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16253; Mature: 16253

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDVNCVGIVMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPM
CCCCCEEEEEEECCCCCCHHHHCCCCEEEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCE
IFVVGLPLKIDGSEQPITILAKIFAIQLKELFPVPVKMHDERFSTSEARLNYFKYYHDDL
EEEEECCEEECCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHH
CARSNIKINAIAAGVILKSWLNKS
HCCCCCEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRDVNCVGIVMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPM
CCCCCEEEEEEECCCCCCHHHHCCCCEEEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCE
IFVVGLPLKIDGSEQPITILAKIFAIQLKELFPVPVKMHDERFSTSEARLNYFKYYHDDL
EEEEECCEEECCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHH
CARSNIKINAIAAGVILKSWLNKS
HCCCCCEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA