| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is slt [H]
Identifier: 66767094
GI number: 66767094
Start: 908168
End: 910201
Strand: Reverse
Name: slt [H]
Synonym: XC_0758
Alternate gene names: 66767094
Gene position: 910201-908168 (Counterclockwise)
Preceding gene: 66767096
Following gene: 66767093
Centisome position: 17.68
GC content: 69.42
Gene sequence:
>2034_bases ATGCGCGGCGCCGCCGCGCCACATTCACTCAAGTGCTCAGCCACGCTTCGGTATAGTCGCGCGATGACTTATTCCCCACG TTTCGCCGCTGTTTTCGCCGGCCTGCTTTGCCTTGGCAGCACTGCGCTGCATGCCCAATCGCTCGATCCGCAATTGACCG CCATGCGCGATGCCATCGCCGCCGCCGAGCGCGGCCAGGCCGACGACGGCCAGCTCACCGCCCTGCGCCGGCATCCGCTG TACGGCTGGCTGGAATACGCCGCGCTCAAGCGCAACATCGACAGCGTCTCCACCGCGCAGGCGCAGGGCTTTCTGCAGCG GTATGCGGGCCAGCCGGTGGCTGAGAGCTTCCGCGGCGCCTGGTTGCCGGCCGTGGCGCGGCGTCAGGACTGGACCACGC TGCTGGCCAACTGGAAGCCCACCGACAACCTGGGCCTGCGCTGTGCGCAGCTGAACGCGCGCCAGGCCACCGGCAAGGCA GATGCGCAGTGGAGCCGCGATGCCTTGACGCTGTGGCGCACCGGCAAGGGCCTGCCCGATGCCTGCGACGCGGTGGTTGC CGGGCTGGAGTCGCGCCGCGAGCTCACCCCCGCCTTGCGCTGGGAGCGCGTGGAAGCCGCTGCCGACGCGCAGCAGCCTG CGGTGATGCGCACGGCCGCACGCGGGCTGCCGCCGGCCGATCTGGCCCTGGCCACCGACTACGCGGCATTCCTGGACAAG GTGCATCCGCGTGCGGCGAGCTGGCCCAGGACCGAGCGCAGCCGCAACATCGCCGTGGACGGCCTGGCCAAGCTGGCCAA GAGCGACCCGGACGCGGCCGAACAACAACTGCCTGCACTGGCCGCCGCGTTGGGCTTCAGCGAGGCGCAGCGTGGGCAGG TGCTGTACCAGATTGCGTTGTGGACCGTGGCCTCGTATCTGCCCGATTCGGCGCGCCGCCTCAATGCAGTGCCCGATGCG TCCTATGACGAACGCCTGCACGAATGGCGCGCGCGTGAGGCGATGTCGCGTGGCGATTGGCCGGCGGCGCTGGCCGCCAT CCGCAAGATGCCGGCTACCCAGCGCAGTGATTCGCGCTGGCAATATTTTGAAGCGCGGCTGGCCGAAAAGACCGGCGCCG CCGCCGCGGCACAGCCGCTGTATCGCGCGGCCGCGCAGTCGCCCACCTTCCACGGCTTCCTGGCTGCCGATCGCCTGCAG CAGCCCTACCGGCTGTGCCCGTGGGAGCCCAAGGACAGCCCGCAGGCCAAGGCTGCGGTGGCACGCGACCCGGCATTGGT GCGCGCCATCGCGCTGTTCCAGATCGACCGCCCCGGCTGGGCCGTGGCCGAATGGAACGATGCCGCCAGCCGCTTCGACG ACAGCCAACGCCGCCTCGCCGTGGAGGTCGCCAGCGACAACGGGTGGTTCGACCGCGCGGTGTTCGCACTCGGCAAGCAG CCCGACGAACAGCGCCTGTACGCGCTGCGCTTTCCGCTGCACCACGACGACAGCATCCGCCGCGAAGCGGCCAAGAATGC GATCGATCCGGCATGGGTGGCCGCGGAGATTCGCGCAGAAAGCATCTTCAATCCACGCGCACGCTCGCCGGCCAATGCAA TGGGCCTGATGCAGGTGTTGCCGGGCACCGGCGCGGCGGTGGCCAAGGGTATTGCCCTGCCCAACTACGGCGGCGCCGCC AGCCTCTACGAGCCAGACACCAACATCGCGATCGGCACGGCTTACCTGCGCCAGCTGCTCAACACCTACGGCCTGCCCTA CGTCACCATCGCCGCCTACAACGCCGGCCCTGGCCCGACCGGGCGCTGGCAGGCGCAACGGCCGGGCTTTGACCCGGATT TCTGGATCGAGACCATCAGCTACAAGGAAACGCGTGAGTACGTTGCGCGGGTGCTGGCCTTCAGCGTGATCTACGACTGG CGCCTCAATGGCGATGCATTGCCGTTGAGCGATCGGCTGATGGGCCGGCTGGTGGACAAGCGCACGCGTCCGGTGTGTTC GCCGGGCCCGGCGGCCAACGCCGCACAGGACTGA
Upstream 100 bases:
>100_bases GGCGATGCAGCACTGCCTCCGTCATCGCATCGGCACGCTTGCTTCGTGCTCCCTACTGAGCGAGTGCCAGCCCCACCTAT GCAGCGCGTGACAGGCGCAC
Downstream 100 bases:
>100_bases CGCAGCCCGCGCACTGCCGCACGCGCTTGCCGTGCGTGGCAGTGCGCAGGGCATCGGGCATCATGTGCGCATGAAGATCT ATCTTGTGGGCGGCGCAGTC
Product: soluble lytic murein transglycosylase
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 677; Mature: 677
Protein sequence:
>677_residues MRGAAAPHSLKCSATLRYSRAMTYSPRFAAVFAGLLCLGSTALHAQSLDPQLTAMRDAIAAAERGQADDGQLTALRRHPL YGWLEYAALKRNIDSVSTAQAQGFLQRYAGQPVAESFRGAWLPAVARRQDWTTLLANWKPTDNLGLRCAQLNARQATGKA DAQWSRDALTLWRTGKGLPDACDAVVAGLESRRELTPALRWERVEAAADAQQPAVMRTAARGLPPADLALATDYAAFLDK VHPRAASWPRTERSRNIAVDGLAKLAKSDPDAAEQQLPALAAALGFSEAQRGQVLYQIALWTVASYLPDSARRLNAVPDA SYDERLHEWRAREAMSRGDWPAALAAIRKMPATQRSDSRWQYFEARLAEKTGAAAAAQPLYRAAAQSPTFHGFLAADRLQ QPYRLCPWEPKDSPQAKAAVARDPALVRAIALFQIDRPGWAVAEWNDAASRFDDSQRRLAVEVASDNGWFDRAVFALGKQ PDEQRLYALRFPLHHDDSIRREAAKNAIDPAWVAAEIRAESIFNPRARSPANAMGLMQVLPGTGAAVAKGIALPNYGGAA SLYEPDTNIAIGTAYLRQLLNTYGLPYVTIAAYNAGPGPTGRWQAQRPGFDPDFWIETISYKETREYVARVLAFSVIYDW RLNGDALPLSDRLMGRLVDKRTRPVCSPGPAANAAQD
Sequences:
>Translated_677_residues MRGAAAPHSLKCSATLRYSRAMTYSPRFAAVFAGLLCLGSTALHAQSLDPQLTAMRDAIAAAERGQADDGQLTALRRHPL YGWLEYAALKRNIDSVSTAQAQGFLQRYAGQPVAESFRGAWLPAVARRQDWTTLLANWKPTDNLGLRCAQLNARQATGKA DAQWSRDALTLWRTGKGLPDACDAVVAGLESRRELTPALRWERVEAAADAQQPAVMRTAARGLPPADLALATDYAAFLDK VHPRAASWPRTERSRNIAVDGLAKLAKSDPDAAEQQLPALAAALGFSEAQRGQVLYQIALWTVASYLPDSARRLNAVPDA SYDERLHEWRAREAMSRGDWPAALAAIRKMPATQRSDSRWQYFEARLAEKTGAAAAAQPLYRAAAQSPTFHGFLAADRLQ QPYRLCPWEPKDSPQAKAAVARDPALVRAIALFQIDRPGWAVAEWNDAASRFDDSQRRLAVEVASDNGWFDRAVFALGKQ PDEQRLYALRFPLHHDDSIRREAAKNAIDPAWVAAEIRAESIFNPRARSPANAMGLMQVLPGTGAAVAKGIALPNYGGAA SLYEPDTNIAIGTAYLRQLLNTYGLPYVTIAAYNAGPGPTGRWQAQRPGFDPDFWIETISYKETREYVARVLAFSVIYDW RLNGDALPLSDRLMGRLVDKRTRPVCSPGPAANAAQD >Mature_677_residues MRGAAAPHSLKCSATLRYSRAMTYSPRFAAVFAGLLCLGSTALHAQSLDPQLTAMRDAIAAAERGQADDGQLTALRRHPL YGWLEYAALKRNIDSVSTAQAQGFLQRYAGQPVAESFRGAWLPAVARRQDWTTLLANWKPTDNLGLRCAQLNARQATGKA DAQWSRDALTLWRTGKGLPDACDAVVAGLESRRELTPALRWERVEAAADAQQPAVMRTAARGLPPADLALATDYAAFLDK VHPRAASWPRTERSRNIAVDGLAKLAKSDPDAAEQQLPALAAALGFSEAQRGQVLYQIALWTVASYLPDSARRLNAVPDA SYDERLHEWRAREAMSRGDWPAALAAIRKMPATQRSDSRWQYFEARLAEKTGAAAAAQPLYRAAAQSPTFHGFLAADRLQ QPYRLCPWEPKDSPQAKAAVARDPALVRAIALFQIDRPGWAVAEWNDAASRFDDSQRRLAVEVASDNGWFDRAVFALGKQ PDEQRLYALRFPLHHDDSIRREAAKNAIDPAWVAAEIRAESIFNPRARSPANAMGLMQVLPGTGAAVAKGIALPNYGGAA SLYEPDTNIAIGTAYLRQLLNTYGLPYVTIAAYNAGPGPTGRWQAQRPGFDPDFWIETISYKETREYVARVLAFSVIYDW RLNGDALPLSDRLMGRLVDKRTRPVCSPGPAANAAQD
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=651, Percent_Identity=29.3394777265745, Blast_Score=209, Evalue=7e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 74177; Mature: 74177
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGAAAPHSLKCSATLRYSRAMTYSPRFAAVFAGLLCLGSTALHAQSLDPQLTAMRDAIA CCCCCCCCCEEEHEEEHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHH AAERGQADDGQLTALRRHPLYGWLEYAALKRNIDSVSTAQAQGFLQRYAGQPVAESFRGA HHHCCCCCCCCEEHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCC WLPAVARRQDWTTLLANWKPTDNLGLRCAQLNARQATGKADAQWSRDALTLWRTGKGLPD CCHHHHCCCCCHHHHCCCCCCCCCCCEEEECCCHHCCCCCCCCCCHHHHHHHHCCCCCCH ACDAVVAGLESRRELTPALRWERVEAAADAQQPAVMRTAARGLPPADLALATDYAAFLDK HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH VHPRAASWPRTERSRNIAVDGLAKLAKSDPDAAEQQLPALAAALGFSEAQRGQVLYQIAL HCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH WTVASYLPDSARRLNAVPDASYDERLHEWRAREAMSRGDWPAALAAIRKMPATQRSDSRW HHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHH QYFEARLAEKTGAAAAAQPLYRAAAQSPTFHGFLAADRLQQPYRLCPWEPKDSPQAKAAV HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH ARDPALVRAIALFQIDRPGWAVAEWNDAASRFDDSQRRLAVEVASDNGWFDRAVFALGKQ HCCHHHHHHHHHHEECCCCCEEEECCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCC PDEQRLYALRFPLHHDDSIRREAAKNAIDPAWVAAEIRAESIFNPRARSPANAMGLMQVL CCHHCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC PGTGAAVAKGIALPNYGGAASLYEPDTNIAIGTAYLRQLLNTYGLPYVTIAAYNAGPGPT CCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEEECCCCCCC GRWQAQRPGFDPDFWIETISYKETREYVARVLAFSVIYDWRLNGDALPLSDRLMGRLVDK CCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHH RTRPVCSPGPAANAAQD HCCCCCCCCCCCCCCCC >Mature Secondary Structure MRGAAAPHSLKCSATLRYSRAMTYSPRFAAVFAGLLCLGSTALHAQSLDPQLTAMRDAIA CCCCCCCCCEEEHEEEHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHH AAERGQADDGQLTALRRHPLYGWLEYAALKRNIDSVSTAQAQGFLQRYAGQPVAESFRGA HHHCCCCCCCCEEHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCC WLPAVARRQDWTTLLANWKPTDNLGLRCAQLNARQATGKADAQWSRDALTLWRTGKGLPD CCHHHHCCCCCHHHHCCCCCCCCCCCEEEECCCHHCCCCCCCCCCHHHHHHHHCCCCCCH ACDAVVAGLESRRELTPALRWERVEAAADAQQPAVMRTAARGLPPADLALATDYAAFLDK HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH VHPRAASWPRTERSRNIAVDGLAKLAKSDPDAAEQQLPALAAALGFSEAQRGQVLYQIAL HCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH WTVASYLPDSARRLNAVPDASYDERLHEWRAREAMSRGDWPAALAAIRKMPATQRSDSRW HHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHH QYFEARLAEKTGAAAAAQPLYRAAAQSPTFHGFLAADRLQQPYRLCPWEPKDSPQAKAAV HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH ARDPALVRAIALFQIDRPGWAVAEWNDAASRFDDSQRRLAVEVASDNGWFDRAVFALGKQ HCCHHHHHHHHHHEECCCCCEEEECCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCC PDEQRLYALRFPLHHDDSIRREAAKNAIDPAWVAAEIRAESIFNPRARSPANAMGLMQVL CCHHCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC PGTGAAVAKGIALPNYGGAASLYEPDTNIAIGTAYLRQLLNTYGLPYVTIAAYNAGPGPT CCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEEECCCCCCC GRWQAQRPGFDPDFWIETISYKETREYVARVLAFSVIYDWRLNGDALPLSDRLMGRLVDK CCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHH RTRPVCSPGPAANAAQD HCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]