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The map label for this gene is prt1 [H]

Identifier: 66766427

GI number: 66766427

Start: 90818

End: 91894

Strand: Reverse

Name: prt1 [H]

Synonym: XC_0077

Alternate gene names: 66766427

Gene position: 91894-90818 (Counterclockwise)

Preceding gene: 66766428

Following gene: 66766426

Centisome position: 1.78

GC content: 69.08

Gene sequence:

>1077_bases
GTGGAGATCGCTATGTCTGCGTTTGTTGCGCCCCGCCGCGCCGGCATCCTGCCGCCGTATCTGCTGGACCACGTGGCGCA
GGCCGCACCGGAGCGCGCACGGCACTGCGCGCAGCTCACCCGCCACATCACCGCGCAGCTGCGCCAGCGCCGCGCGCAGG
GGTTGCTGGCGCGCGACAGCGCCGACGATGCGCCCACCGCCACCACTGACACCGCGGTGCGGCGGCATCTCTACGACGCC
CGGCAAGGCACCGCCCTGCCTGGCGTGCTGGTGCGCGAGGAAGGTGCGCCGCCCACCGACGATGTCGCCGTGACCGAGGC
TTACGATTACCTCGGCGCCACCCATGCCTTCTTCCAGCAGGTGTATGCGCGCAACTCGATCGACGATGCCGGCATGCCGC
TGCTTGGTACCGTGCACTACGAGCGCAACTACGACAACGCGTTCTGGACCGGCGAGCAGATGGTGTTCGGCGATGGCGAC
GGCGAGATCTTCACCCGCTTCACCATCGCCATCGACGTGGTGGCCCACGAGCTCACCCACGGTGTCATCGAGCGCACCGC
CAACCTGATCTACCAGGGCCAGTCCGGTGCCTTGAACGAATCGGTCTCCGACGTGTTCGGCGTGCTCGTCAAGCAATACG
CGCTGCGCCAGGACGCCGCGCAGGCCGATTGGCTGGTGGGTGCCGGCATGTTCCTGCCCGGCGTGCAGGGCGTGGCGCTA
CGCTCGATGCAGGCGCCGGGCACCGCCTACGATGACCCGGCATTGGGCAAGGACCCGCAACCGGCGCATATGGACGCCTA
CGTGGACACGCAAGAAGACGACGGCGGCGTGCACTACAACTCCGGTATTCCCAACCGCGCCTTCCAGCGCGCCGCGGTTG
CCATCGGCGGTTACGCCTGGGAAAAGGCCGGGCGCATCTGGTACCGCGCCCTCACCGGTGGCGCGCTGTCGGCCAGTGCG
GACTTCGCCACCTTCGCCGCACTCACCGTGCGCGTGGCCAGCACCGATTACGGCGCGGGCAGTGCCGAGGCCAGTGCGGT
GGAACAGGCCTGGCGCGACGTGGGCGTGCTCGCATGA

Upstream 100 bases:

>100_bases
AACGCCAGCCGGTCCGCAGCGCGCTGCCATGGCAAGGGCCGCTGGCAGCTAACGATTTCCTAAAGTCGCACCGCGCATAG
TCGCCGGCGCAGCCCCCACT

Downstream 100 bases:

>100_bases
CCGTGCAACTGCCGCCCTTGCAACCGGGTGTCGTGTTGCGGTTGGCACGCGAAGGTGGCGTGGCCGCGTTCCCGGCCATG
CGCCGCGAGCGCCAGCTGCT

Product: metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MEIAMSAFVAPRRAGILPPYLLDHVAQAAPERARHCAQLTRHITAQLRQRRAQGLLARDSADDAPTATTDTAVRRHLYDA
RQGTALPGVLVREEGAPPTDDVAVTEAYDYLGATHAFFQQVYARNSIDDAGMPLLGTVHYERNYDNAFWTGEQMVFGDGD
GEIFTRFTIAIDVVAHELTHGVIERTANLIYQGQSGALNESVSDVFGVLVKQYALRQDAAQADWLVGAGMFLPGVQGVAL
RSMQAPGTAYDDPALGKDPQPAHMDAYVDTQEDDGGVHYNSGIPNRAFQRAAVAIGGYAWEKAGRIWYRALTGGALSASA
DFATFAALTVRVASTDYGAGSAEASAVEQAWRDVGVLA

Sequences:

>Translated_358_residues
MEIAMSAFVAPRRAGILPPYLLDHVAQAAPERARHCAQLTRHITAQLRQRRAQGLLARDSADDAPTATTDTAVRRHLYDA
RQGTALPGVLVREEGAPPTDDVAVTEAYDYLGATHAFFQQVYARNSIDDAGMPLLGTVHYERNYDNAFWTGEQMVFGDGD
GEIFTRFTIAIDVVAHELTHGVIERTANLIYQGQSGALNESVSDVFGVLVKQYALRQDAAQADWLVGAGMFLPGVQGVAL
RSMQAPGTAYDDPALGKDPQPAHMDAYVDTQEDDGGVHYNSGIPNRAFQRAAVAIGGYAWEKAGRIWYRALTGGALSASA
DFATFAALTVRVASTDYGAGSAEASAVEQAWRDVGVLA
>Mature_358_residues
MEIAMSAFVAPRRAGILPPYLLDHVAQAAPERARHCAQLTRHITAQLRQRRAQGLLARDSADDAPTATTDTAVRRHLYDA
RQGTALPGVLVREEGAPPTDDVAVTEAYDYLGATHAFFQQVYARNSIDDAGMPLLGTVHYERNYDNAFWTGEQMVFGDGD
GEIFTRFTIAIDVVAHELTHGVIERTANLIYQGQSGALNESVSDVFGVLVKQYALRQDAAQADWLVGAGMFLPGVQGVAL
RSMQAPGTAYDDPALGKDPQPAHMDAYVDTQEDDGGVHYNSGIPNRAFQRAAVAIGGYAWEKAGRIWYRALTGGALSASA
DFATFAALTVRVASTDYGAGSAEASAVEQAWRDVGVLA

Specific function: Unknown

COG id: COG3227

COG function: function code E; Zinc metalloprotease (elastase)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013856
- InterPro:   IPR001570 [H]

Pfam domain/function: PF01447 Peptidase_M4; PF02868 Peptidase_M4_C [H]

EC number: NA

Molecular weight: Translated: 38473; Mature: 38473

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIAMSAFVAPRRAGILPPYLLDHVAQAAPERARHCAQLTRHITAQLRQRRAQGLLARDS
CCCCHHHHHCCHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
ADDAPTATTDTAVRRHLYDARQGTALPGVLVREEGAPPTDDVAVTEAYDYLGATHAFFQQ
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
VYARNSIDDAGMPLLGTVHYERNYDNAFWTGEQMVFGDGDGEIFTRFTIAIDVVAHELTH
HHHCCCCCCCCCCEEEEEEECCCCCCCEECCCEEEEECCCCCEEEEHHHHHHHHHHHHHH
GVIERTANLIYQGQSGALNESVSDVFGVLVKQYALRQDAAQADWLVGAGMFLPGVQGVAL
HHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHH
RSMQAPGTAYDDPALGKDPQPAHMDAYVDTQEDDGGVHYNSGIPNRAFQRAAVAIGGYAW
HHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHCCHHH
EKAGRIWYRALTGGALSASADFATFAALTVRVASTDYGAGSAEASAVEQAWRDVGVLA
HHHCCEEEEECCCCCCCCCCHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEIAMSAFVAPRRAGILPPYLLDHVAQAAPERARHCAQLTRHITAQLRQRRAQGLLARDS
CCCCHHHHHCCHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
ADDAPTATTDTAVRRHLYDARQGTALPGVLVREEGAPPTDDVAVTEAYDYLGATHAFFQQ
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
VYARNSIDDAGMPLLGTVHYERNYDNAFWTGEQMVFGDGDGEIFTRFTIAIDVVAHELTH
HHHCCCCCCCCCCEEEEEEECCCCCCCEECCCEEEEECCCCCEEEEHHHHHHHHHHHHHH
GVIERTANLIYQGQSGALNESVSDVFGVLVKQYALRQDAAQADWLVGAGMFLPGVQGVAL
HHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHH
RSMQAPGTAYDDPALGKDPQPAHMDAYVDTQEDDGGVHYNSGIPNRAFQRAAVAIGGYAW
HHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHCCHHH
EKAGRIWYRALTGGALSASADFATFAALTVRVASTDYGAGSAEASAVEQAWRDVGVLA
HHHCCEEEEECCCCCCCCCCHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1917878 [H]