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The map label for this gene is cph2 [H]

Identifier: 66045521

GI number: 66045521

Start: 2648793

End: 2650460

Strand: Direct

Name: cph2 [H]

Synonym: Psyr_2281

Alternate gene names: 66045521

Gene position: 2648793-2650460 (Clockwise)

Preceding gene: 66045520

Following gene: 66045524

Centisome position: 43.47

GC content: 58.69

Gene sequence:

>1668_bases
ATGGCCCCTGAGCAATCAGGTCCGGTTTTCAGAAAAACCAGATGCACTGGTTCTCACCTGTTGTGGAGGCAAGTTTTGAA
ACGCGACCTTCGGCTTGCGTCATGGCTGATCTTCGTAGTGTGCGCCTGCGTGGTGATGTTGATGGCCTGGCAAGCATGGA
CCGCACGCCGCAACACCCTGGAAAACATCCAGACCAGCACGATCAATCTGGCTGGAGCGCTGAGCACCTACACGGATGGT
ATTTTCAAGCAAAGCGAGCTGATGCTGATCGGCCTGACGGAGCGTGTCGAAAAGGACGGCGTCGGGCCTGAACAGATCGA
GCGTCTCAGGTGGGTCATTGCGCGTGAAATGGGCGCGCTGCCGCAGATCGATACCGTGTCGCTGTACAACGCCGACGGGT
ACTGCATCTTCTCGAGCAATCCCAAGGTCATTGGCATCAACAGCGGGCAGCGCGAGTTCTTTCAGCACCACCTGCAGATG
CCTGACAAAACCCCTTATATCGGCCCGACGATTCGCAGTCGCGCTTCCGGCGAATGGGTCATATCAGTCAGCAGGCGCAT
CAATAATCCCGACGCCAGTTTTGCCGGGCTGATGGTCGCGACCATCGGTGTCGACCATCTGTTGAAGTTCTACTCGGATA
TAAAGGTTGGTCGAACCGGCATCATCAGTCTGACGTCGACCGCCGGGCAATTGCGGGTGCGTTATCCCCATCTGGAGCAG
GAGATCGGTCGCGATCTGTCATCGACGCCCATTTTCAAGTCGGAACGCGGGCGAGTGTCCGGTACCGCCCAGTTCGTTTC
CAGGATTGACGGTGTTGCGCGTTTTTATGCGTTCAAACGCAGTGATGTGTACCCGATCGTCACCGTGGTTGCGCTGGGTC
AGAAAGAAGCCATGCTCGACTGGCTGGGTCAGACCAAGCAGTCCATTCTGGTCATGCTGGTGCTGCTCGGACTGGTGATC
GGACTTGGCGTTCGTCTGATCGGGCATATTCACAGCCGCATACGCGCAGAAGACCAGTTGCTCGATTCCCAGGCGGCCCT
GATCCAGCTGAACCAGCACCTGGAGTTGATCGCCTCCGAAGACAAACTGACCGGGCTGGCCAATCGCAGACGTTTCGATC
AGTTTCTGGAAGTCGAATTCAAGCGCGCCAGACGCGAGCGCAGCCCGCTGTCGTTGATTCTGATCGATGCCGATCATTTC
AAGCGCTATAACGATCATTACGGTCACCTGGCCGGTGACGAATGCCTGATTGCGCTGGCCAGAGTGGTCGAGCAGTTCAT
TCGTCGTCCCAGTGACGTCGCCGCCCGTTATGGCGGTGAAGAGATCGCGGTGGTGTTGCCCGGTACTGATGAGTCGAACG
CTCGCCAGGTGGCCGAGAAGATCCTGCGGGCGATCCGTGACGAGCAGATCGAACATCCTGCCAGCCCGTTTGGCATCGTG
ACGATCAGCCTCGGTGTTGCGACATTCGTCGGCACGGATCGCCAACTGGATCAGCGCGGCCTGATCGAGCTTGCCGACCG
CGCGTTGTATGCCGCCAAGTCGCAGGGGCGCAACCGGGTGAATGTGGCGTCGGAAATCGCGACCAGTACGTTACCGGCCT
GGACCCGCGTCAAGTCCGCTACGGACGCGCAAGCCGACACGGAGCCAAGGTCGGGCCAGCGGGATTGA

Upstream 100 bases:

>100_bases
ATTATGATGCCACTCTCTGGCATGCTTTTATCGATGCCAGGCCTTCCAGGTATGGCCGAGCACTTGCCGACAACGGCAGT
TGATAGCGAAAGGATTGTCG

Downstream 100 bases:

>100_bases
TGCCCGCCGGCCGTCTCTGGCCTAGCGCTTCTCAGGCAGCTGCTGGTCTTCGTTAGCCTGTTGCGCATGCGGTTTGCGGC
GCAGCACGGACAGGACCCAG

Product: GGDEF

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 555; Mature: 554

Protein sequence:

>555_residues
MAPEQSGPVFRKTRCTGSHLLWRQVLKRDLRLASWLIFVVCACVVMLMAWQAWTARRNTLENIQTSTINLAGALSTYTDG
IFKQSELMLIGLTERVEKDGVGPEQIERLRWVIAREMGALPQIDTVSLYNADGYCIFSSNPKVIGINSGQREFFQHHLQM
PDKTPYIGPTIRSRASGEWVISVSRRINNPDASFAGLMVATIGVDHLLKFYSDIKVGRTGIISLTSTAGQLRVRYPHLEQ
EIGRDLSSTPIFKSERGRVSGTAQFVSRIDGVARFYAFKRSDVYPIVTVVALGQKEAMLDWLGQTKQSILVMLVLLGLVI
GLGVRLIGHIHSRIRAEDQLLDSQAALIQLNQHLELIASEDKLTGLANRRRFDQFLEVEFKRARRERSPLSLILIDADHF
KRYNDHYGHLAGDECLIALARVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILRAIRDEQIEHPASPFGIV
TISLGVATFVGTDRQLDQRGLIELADRALYAAKSQGRNRVNVASEIATSTLPAWTRVKSATDAQADTEPRSGQRD

Sequences:

>Translated_555_residues
MAPEQSGPVFRKTRCTGSHLLWRQVLKRDLRLASWLIFVVCACVVMLMAWQAWTARRNTLENIQTSTINLAGALSTYTDG
IFKQSELMLIGLTERVEKDGVGPEQIERLRWVIAREMGALPQIDTVSLYNADGYCIFSSNPKVIGINSGQREFFQHHLQM
PDKTPYIGPTIRSRASGEWVISVSRRINNPDASFAGLMVATIGVDHLLKFYSDIKVGRTGIISLTSTAGQLRVRYPHLEQ
EIGRDLSSTPIFKSERGRVSGTAQFVSRIDGVARFYAFKRSDVYPIVTVVALGQKEAMLDWLGQTKQSILVMLVLLGLVI
GLGVRLIGHIHSRIRAEDQLLDSQAALIQLNQHLELIASEDKLTGLANRRRFDQFLEVEFKRARRERSPLSLILIDADHF
KRYNDHYGHLAGDECLIALARVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILRAIRDEQIEHPASPFGIV
TISLGVATFVGTDRQLDQRGLIELADRALYAAKSQGRNRVNVASEIATSTLPAWTRVKSATDAQADTEPRSGQRD
>Mature_554_residues
APEQSGPVFRKTRCTGSHLLWRQVLKRDLRLASWLIFVVCACVVMLMAWQAWTARRNTLENIQTSTINLAGALSTYTDGI
FKQSELMLIGLTERVEKDGVGPEQIERLRWVIAREMGALPQIDTVSLYNADGYCIFSSNPKVIGINSGQREFFQHHLQMP
DKTPYIGPTIRSRASGEWVISVSRRINNPDASFAGLMVATIGVDHLLKFYSDIKVGRTGIISLTSTAGQLRVRYPHLEQE
IGRDLSSTPIFKSERGRVSGTAQFVSRIDGVARFYAFKRSDVYPIVTVVALGQKEAMLDWLGQTKQSILVMLVLLGLVIG
LGVRLIGHIHSRIRAEDQLLDSQAALIQLNQHLELIASEDKLTGLANRRRFDQFLEVEFKRARRERSPLSLILIDADHFK
RYNDHYGHLAGDECLIALARVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILRAIRDEQIEHPASPFGIVT
ISLGVATFVGTDRQLDQRGLIELADRALYAAKSQGRNRVNVASEIATSTLPAWTRVKSATDAQADTEPRSGQRD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=36.8715083798883, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1787262, Length=282, Percent_Identity=30.1418439716312, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=40.5714285714286, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=37.037037037037, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=38.953488372093, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1788381, Length=165, Percent_Identity=35.7575757575758, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787816, Length=190, Percent_Identity=34.2105263157895, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788085, Length=200, Percent_Identity=29.5, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=30.939226519337, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=30.1675977653631, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=184, Percent_Identity=31.5217391304348, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=192, Percent_Identity=28.6458333333333, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=30.8176100628931, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 61953; Mature: 61822

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPEQSGPVFRKTRCTGSHLLWRQVLKRDLRLASWLIFVVCACVVMLMAWQAWTARRNTL
CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENIQTSTINLAGALSTYTDGIFKQSELMLIGLTERVEKDGVGPEQIERLRWVIAREMGAL
HHHHHHHEEHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCC
PQIDTVSLYNADGYCIFSSNPKVIGINSGQREFFQHHLQMPDKTPYIGPTIRSRASGEWV
CCCCEEEEECCCCEEEECCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCHHCCCCCCEE
ISVSRRINNPDASFAGLMVATIGVDHLLKFYSDIKVGRTGIISLTSTAGQLRVRYPHLEQ
EEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCHHH
EIGRDLSSTPIFKSERGRVSGTAQFVSRIDGVARFYAFKRSDVYPIVTVVALGQKEAMLD
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHH
WLGQTKQSILVMLVLLGLVIGLGVRLIGHIHSRIRAEDQLLDSQAALIQLNQHLELIASE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DKLTGLANRRRFDQFLEVEFKRARRERSPLSLILIDADHFKRYNDHYGHLAGDECLIALA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCCCCHHHHHHHH
RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILRAIRDEQIEHPASPFGIV
HHHHHHHHCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
TISLGVATFVGTDRQLDQRGLIELADRALYAAKSQGRNRVNVASEIATSTLPAWTRVKSA
EEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCC
TDAQADTEPRSGQRD
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
APEQSGPVFRKTRCTGSHLLWRQVLKRDLRLASWLIFVVCACVVMLMAWQAWTARRNTL
CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENIQTSTINLAGALSTYTDGIFKQSELMLIGLTERVEKDGVGPEQIERLRWVIAREMGAL
HHHHHHHEEHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCC
PQIDTVSLYNADGYCIFSSNPKVIGINSGQREFFQHHLQMPDKTPYIGPTIRSRASGEWV
CCCCEEEEECCCCEEEECCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCHHCCCCCCEE
ISVSRRINNPDASFAGLMVATIGVDHLLKFYSDIKVGRTGIISLTSTAGQLRVRYPHLEQ
EEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCHHH
EIGRDLSSTPIFKSERGRVSGTAQFVSRIDGVARFYAFKRSDVYPIVTVVALGQKEAMLD
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHH
WLGQTKQSILVMLVLLGLVIGLGVRLIGHIHSRIRAEDQLLDSQAALIQLNQHLELIASE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DKLTGLANRRRFDQFLEVEFKRARRERSPLSLILIDADHFKRYNDHYGHLAGDECLIALA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCCCCHHHHHHHH
RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILRAIRDEQIEHPASPFGIV
HHHHHHHHCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
TISLGVATFVGTDRQLDQRGLIELADRALYAAKSQGRNRVNVASEIATSTLPAWTRVKSA
EEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCC
TDAQADTEPRSGQRD
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]