| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is yggL [H]
Identifier: 66045352
GI number: 66045352
Start: 2468968
End: 2469312
Strand: Direct
Name: yggL [H]
Synonym: Psyr_2112
Alternate gene names: 66045352
Gene position: 2468968-2469312 (Clockwise)
Preceding gene: 66045350
Following gene: 66045359
Centisome position: 40.52
GC content: 56.52
Gene sequence:
>345_bases ATGGCCACTAACCGCTCCCGCCGTCTGCGCAAAAAACTGTGTGTGGACGAGTTCCAGGAATTGGGTTTTGAACTGAACCT GGACTTCAAGCAAGAGCTGGACGACAAGGCAATCGATGCTTTCCTTGACGCTTTCCTGAAAGAAGCAATGGAAGCCAACG GTCTTGGCTATGTGGGCGGCGACGACTTCGGTCTGGTTTGCCTGAGCAAGCGTGGCTCGGTCAGCGAAGAGCAGCGTGCT GCTGTCGAAGCCTGGCTCAAGGGCCGCAGCGAACTGACAGAAGTCACTGTCAGCCCGCTGATCGACGTCTGGTACCCGGA AAAGGAAATCAATCCGGCCGCCTGA
Upstream 100 bases:
>100_bases CGTCGCAAGGCCGGATATCCACTCCACACCGCAATTGTCGGGCTTTTAAATCGCCAAGCTGGTAAAGTGCCGCCCGATAT TTATTGATGAGGATTGTCCC
Downstream 100 bases:
>100_bases TGTAACGGGAAGCAGGCCAGCGCCTGCTTCCCTTGCCTGTTCCCGCACGTCCCCTCGTACACCCCCTCGCTATACCGTCT TTAACGCTCAGTCAGGCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 114; Mature: 113
Protein sequence:
>114_residues MATNRSRRLRKKLCVDEFQELGFELNLDFKQELDDKAIDAFLDAFLKEAMEANGLGYVGGDDFGLVCLSKRGSVSEEQRA AVEAWLKGRSELTEVTVSPLIDVWYPEKEINPAA
Sequences:
>Translated_114_residues MATNRSRRLRKKLCVDEFQELGFELNLDFKQELDDKAIDAFLDAFLKEAMEANGLGYVGGDDFGLVCLSKRGSVSEEQRA AVEAWLKGRSELTEVTVSPLIDVWYPEKEINPAA >Mature_113_residues ATNRSRRLRKKLCVDEFQELGFELNLDFKQELDDKAIDAFLDAFLKEAMEANGLGYVGGDDFGLVCLSKRGSVSEEQRAA VEAWLKGRSELTEVTVSPLIDVWYPEKEINPAA
Specific function: Unknown
COG id: COG3171
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0341 [H]
Homologues:
Organism=Escherichia coli, GI87082190, Length=108, Percent_Identity=44.4444444444444, Blast_Score=90, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007416 [H]
Pfam domain/function: PF04320 DUF469 [H]
EC number: NA
Molecular weight: Translated: 12815; Mature: 12683
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATNRSRRLRKKLCVDEFQELGFELNLDFKQELDDKAIDAFLDAFLKEAMEANGLGYVGG CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCC DDFGLVCLSKRGSVSEEQRAAVEAWLKGRSELTEVTVSPLIDVWYPEKEINPAA CCCEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure ATNRSRRLRKKLCVDEFQELGFELNLDFKQELDDKAIDAFLDAFLKEAMEANGLGYVGG CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCC DDFGLVCLSKRGSVSEEQRAAVEAWLKGRSELTEVTVSPLIDVWYPEKEINPAA CCCEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 2001994 [H]