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The map label for this gene is xerD [H]

Identifier: 66044534

GI number: 66044534

Start: 1451032

End: 1451928

Strand: Direct

Name: xerD [H]

Synonym: Psyr_1286

Alternate gene names: 66044534

Gene position: 1451032-1451928 (Clockwise)

Preceding gene: 66044533

Following gene: 66044535

Centisome position: 23.81

GC content: 62.21

Gene sequence:

>897_bases
ATGGCTGCCATCGACCACCCGCTGATTGACCGGTTTCTGGACGCGCTCTGGCTCGAGAAGGGGCTGTCCGACAACACCCG
GGATGCTTACCGCAGTGACCTGGCGCTGTTCAACGGCTGGCTGCAGGAGCGCAACGTTGATCTGATCAGTGCCGGGCGCG
AAGTGATCCTCGATCATCTTGCCTGGCGCGTGGACAATGCCTATAAGCCACGCTCCACTGCGCGTTTTCTGTCCGGCGCA
CGTGGCTTCTACCGCTACTTGCTGCGCGAAAAGCTGATTGCCGTTGATCCCACCCTGCAGATCGACATGCCTCAATTGGG
CAAACCGTTGCCCAAATCGCTTTCCGAAGCTGACGTCGAAGCATTGCTTGCTGCTCCCGACCTGAGCGAGCCCATCGGCG
AGCGTGACCGCGCCATGCTTGAGGTGCTGTATGCCTGCGGTCTGCGCGTGACCGAATTGATCAGCCTGACCCTGGAACAG
GTCAACTTGCGCCAGGGCGTGCTGCGCGTGATGGGCAAAGGCAGCAAGGAGCGACTGGTGCCCATGGGCGAAGAGTCCAT
CGTCTGGGTCGAGCGTTACCTGCGCGGTGCCCGCGACGAGTTGCTGGGCGGAAAGCCCAGCGACGTCCTGTTCCCCAGCA
CCCGTGGCGACCAGATGACCCGCCAGACCTTCTGGCACCGTATCAAGCATCAGGCGACGGTTGCGGGCATCGGCAAATCC
CTGTCACCGCACACCCTGCGCCACGCCTTCGCCACCCATCTGCTCAATCACGGCGCCGACTTGCGTGTGGTGCAGATGTT
GCTCGGGCACAGTGATCTCTCGACGACGCAGATCTACACCCATGTGGCGCGTGCGCGATTGCAGGAGATGCATGCCAGGC
ATCATCCGCGCGGTTAG

Upstream 100 bases:

>100_bases
AGTTTTTCGATGCATAAAAAAGGCAGCCTCAGGGCTGCCTTTTTGCTGCCTGCTGTTTGATGATTCACCCCTTGTCTACC
AACACATGCACTGAGTAAAC

Downstream 100 bases:

>100_bases
TGGTCTGTTGATGGATTCGAGAGTCGGGTGGTGTTTTTATGAATGATTATTACCAATCGATCTACTGATGTATGCGCGCA
GTGTCCGCAGGTAGCTAATA

Product: site-specific tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MAAIDHPLIDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVDNAYKPRSTARFLSGA
RGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQ
VNLRQGVLRVMGKGSKERLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKS
LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPRG

Sequences:

>Translated_298_residues
MAAIDHPLIDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVDNAYKPRSTARFLSGA
RGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQ
VNLRQGVLRVMGKGSKERLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKS
LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPRG
>Mature_297_residues
AAIDHPLIDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVDNAYKPRSTARFLSGAR
GFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQV
NLRQGVLRVMGKGSKERLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSL
SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=60.1374570446735, Blast_Score=350, Evalue=8e-98,
Organism=Escherichia coli, GI1790244, Length=294, Percent_Identity=35.3741496598639, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1790768, Length=177, Percent_Identity=29.3785310734463, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790767, Length=172, Percent_Identity=26.1627906976744, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33670; Mature: 33539

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAIDHPLIDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQERNVDLISAGREVILDHL
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AWRVDNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCHHHHHHHHHH
ALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLV
HHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
PMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKS
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPRG
CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AAIDHPLIDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQERNVDLISAGREVILDHL
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AWRVDNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCHHHHHHHHHH
ALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLV
HHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
PMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKS
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPRG
CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]