Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
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Accession | NC_007005 |
Length | 6,093,698 |
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The map label for this gene is 66044133
Identifier: 66044133
GI number: 66044133
Start: 1000822
End: 1002063
Strand: Direct
Name: 66044133
Synonym: Psyr_0878
Alternate gene names: NA
Gene position: 1000822-1002063 (Clockwise)
Preceding gene: 66044132
Following gene: 66044134
Centisome position: 16.42
GC content: 61.35
Gene sequence:
>1242_bases ATGCCCTTTTACCCTTCATATCGTCGACTGTCCCTGAGCTACCGCGCCGTGATCGCAGCGTTACTGCTGGGCAGTTCGTG CGCGCAAGCAGACTTCGCCATCCCGGGTTTCGAGCTGGTACATACCGTGCCGGTCGGGTCTGACTTGCAGACGCCTGACC TGCGAGCACCCGGCGAAGTCTGGCGCGAGCTGTTTGACGGGGCTCGCGAGCGTATCGACATCGAACAGTTCTATGTCGCA GACCACGCAGGCTCGGTCATGGACAAGGTGCTTGAAAGCCTGACGGCAGCCGGGCAGCGCGGAGTGAAAATCCGGTTTCT GCTGGAAGAAAAAGGCCTGAAACTTTCCGACCCGCAGACCCTTGAGCGACTGCGCGCGATCCCCAACCTCACCTTGCGCG TACTGCCCTACGCAAAGCTCACGGGCAGCGGCATCATTCACGCCAAATTCTTGGTCGTGGATGGCCGACAGGCGTTCATC GGCAGTCAGAACTTCGATTGGCGCTCACTGGAGCACATCCACGAAACCGGCCTGCGCATTGACGAGCCGACCGTCGTGGG CCAGACGCAGGCCATATTCGATCAGGACTGGCTTGCCCAGGCTGCCATTACCGAGGGCAAACCGGTTCCGGTGCCGCGCC CGGTCGATAGCACATCGCCCAACGGCAACTACCTGATCGCCAGTCCGCAGCGCTATAACCCGCCAGGGGTCGTCGACTCC CAGGCCGAACTGCCCCGTTTGCTGGCGCAAGCCAAAAGCGAGGTTCGTGTCCAGTTGCTGGACTACGCGCCCCTGTCCTA CGGGGCCGACAAAACCCGGCCTTACTATGCGGTCATCGATAATGCCCTGCGCAGCGCAGCCGCCCGCGGCGTGTCGATCA AACTCATGGTGTCCGACTGGAACACCGGCATGCCCGAAGTCGCCTACCTCAAGAGTCTGGCCCTGGTGCCCAACGTGCAG GTGCGCATCGTCACATTGCCGATGGCGGCTCAGGGTTTTATCCCCTATGCACGCGTGATCCACAGCAAGACCATGGATAT TGATGATCAGGTGGCCTGGGTAGGCACCAGCAACTGGCTGGGCGGCTACCTCGACAACTCGCGCAATCTGGAAGTGGTGA TGCACGACGGCTCGATGGCCAAACGCATCGGCCAACTGCACGAGCAGCTTTGGGATGGACCGTACGCCAAGCCCATCGAC ATCAATCGCGACTACCCGGAGCCGCATCCGGGTAAGCCTTGA
Upstream 100 bases:
>100_bases GCTGTTTCGGCTCAACCGAAATACCGCACGGCCTGATCCAAATAGCGGCGCGTGCCTCTGGCATTCGCCATCTTGTCTGT GTCTGGCGATGAGGCTCGCA
Downstream 100 bases:
>100_bases CAGTAAGCAGATGGGTAGCCGAAAGGGCAGGGCAGTGTTAGTGAGGGGGTTGAAATGAGCTTGATCGTCCGTGCCATGGC AGACAGTGACTGGTCTTCGC
Product: phospholipase D/transphosphatidylase
Products: NA
Alternate protein names: Phospholipase D/Transphosphatidylase; Phospholipase D/ Transphosphatidylase; Phospholipase D
Number of amino acids: Translated: 413; Mature: 412
Protein sequence:
>413_residues MPFYPSYRRLSLSYRAVIAALLLGSSCAQADFAIPGFELVHTVPVGSDLQTPDLRAPGEVWRELFDGARERIDIEQFYVA DHAGSVMDKVLESLTAAGQRGVKIRFLLEEKGLKLSDPQTLERLRAIPNLTLRVLPYAKLTGSGIIHAKFLVVDGRQAFI GSQNFDWRSLEHIHETGLRIDEPTVVGQTQAIFDQDWLAQAAITEGKPVPVPRPVDSTSPNGNYLIASPQRYNPPGVVDS QAELPRLLAQAKSEVRVQLLDYAPLSYGADKTRPYYAVIDNALRSAAARGVSIKLMVSDWNTGMPEVAYLKSLALVPNVQ VRIVTLPMAAQGFIPYARVIHSKTMDIDDQVAWVGTSNWLGGYLDNSRNLEVVMHDGSMAKRIGQLHEQLWDGPYAKPID INRDYPEPHPGKP
Sequences:
>Translated_413_residues MPFYPSYRRLSLSYRAVIAALLLGSSCAQADFAIPGFELVHTVPVGSDLQTPDLRAPGEVWRELFDGARERIDIEQFYVA DHAGSVMDKVLESLTAAGQRGVKIRFLLEEKGLKLSDPQTLERLRAIPNLTLRVLPYAKLTGSGIIHAKFLVVDGRQAFI GSQNFDWRSLEHIHETGLRIDEPTVVGQTQAIFDQDWLAQAAITEGKPVPVPRPVDSTSPNGNYLIASPQRYNPPGVVDS QAELPRLLAQAKSEVRVQLLDYAPLSYGADKTRPYYAVIDNALRSAAARGVSIKLMVSDWNTGMPEVAYLKSLALVPNVQ VRIVTLPMAAQGFIPYARVIHSKTMDIDDQVAWVGTSNWLGGYLDNSRNLEVVMHDGSMAKRIGQLHEQLWDGPYAKPID INRDYPEPHPGKP >Mature_412_residues PFYPSYRRLSLSYRAVIAALLLGSSCAQADFAIPGFELVHTVPVGSDLQTPDLRAPGEVWRELFDGARERIDIEQFYVAD HAGSVMDKVLESLTAAGQRGVKIRFLLEEKGLKLSDPQTLERLRAIPNLTLRVLPYAKLTGSGIIHAKFLVVDGRQAFIG SQNFDWRSLEHIHETGLRIDEPTVVGQTQAIFDQDWLAQAAITEGKPVPVPRPVDSTSPNGNYLIASPQRYNPPGVVDSQ AELPRLLAQAKSEVRVQLLDYAPLSYGADKTRPYYAVIDNALRSAAARGVSIKLMVSDWNTGMPEVAYLKSLALVPNVQV RIVTLPMAAQGFIPYARVIHSKTMDIDDQVAWVGTSNWLGGYLDNSRNLEVVMHDGSMAKRIGQLHEQLWDGPYAKPIDI NRDYPEPHPGKP
Specific function: Unknown
COG id: COG1502
COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI166197683, Length=405, Percent_Identity=27.9012345679012, Blast_Score=138, Evalue=9e-33, Organism=Homo sapiens, GI72534684, Length=405, Percent_Identity=27.9012345679012, Blast_Score=138, Evalue=9e-33, Organism=Homo sapiens, GI94681038, Length=403, Percent_Identity=27.2952853598015, Blast_Score=127, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17559458, Length=392, Percent_Identity=30.3571428571429, Blast_Score=184, Evalue=6e-47, Organism=Caenorhabditis elegans, GI193207667, Length=392, Percent_Identity=30.3571428571429, Blast_Score=184, Evalue=6e-47, Organism=Caenorhabditis elegans, GI193208604, Length=422, Percent_Identity=23.9336492890995, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17532785, Length=369, Percent_Identity=25.4742547425474, Blast_Score=99, Evalue=6e-21, Organism=Caenorhabditis elegans, GI32566758, Length=418, Percent_Identity=24.1626794258373, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17565994, Length=418, Percent_Identity=23.9234449760766, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24585591, Length=422, Percent_Identity=28.6729857819905, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI20129681, Length=422, Percent_Identity=28.6729857819905, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI19921618, Length=406, Percent_Identity=23.8916256157635, Blast_Score=93, Evalue=3e-19, Organism=Drosophila melanogaster, GI116007352, Length=333, Percent_Identity=24.3243243243243, Blast_Score=75, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45729; Mature: 45598
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFYPSYRRLSLSYRAVIAALLLGSSCAQADFAIPGFELVHTVPVGSDLQTPDLRAPGEV CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHH WRELFDGARERIDIEQFYVADHAGSVMDKVLESLTAAGQRGVKIRFLLEEKGLKLSDPQT HHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHH LERLRAIPNLTLRVLPYAKLTGSGIIHAKFLVVDGRQAFIGSQNFDWRSLEHIHETGLRI HHHHHHCCCCEEEEECCCEECCCCEEEEEEEEEECCCEEECCCCCCHHHHHHHHHCCCEE DEPTVVGQTQAIFDQDWLAQAAITEGKPVPVPRPVDSTSPNGNYLIASPQRYNPPGVVDS CCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC QAELPRLLAQAKSEVRVQLLDYAPLSYGADKTRPYYAVIDNALRSAAARGVSIKLMVSDW HHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC NTGMPEVAYLKSLALVPNVQVRIVTLPMAAQGFIPYARVIHSKTMDIDDQVAWVGTSNWL CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCC GGYLDNSRNLEVVMHDGSMAKRIGQLHEQLWDGPYAKPIDINRDYPEPHPGKP CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PFYPSYRRLSLSYRAVIAALLLGSSCAQADFAIPGFELVHTVPVGSDLQTPDLRAPGEV CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHH WRELFDGARERIDIEQFYVADHAGSVMDKVLESLTAAGQRGVKIRFLLEEKGLKLSDPQT HHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHH LERLRAIPNLTLRVLPYAKLTGSGIIHAKFLVVDGRQAFIGSQNFDWRSLEHIHETGLRI HHHHHHCCCCEEEEECCCEECCCCEEEEEEEEEECCCEEECCCCCCHHHHHHHHHCCCEE DEPTVVGQTQAIFDQDWLAQAAITEGKPVPVPRPVDSTSPNGNYLIASPQRYNPPGVVDS CCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC QAELPRLLAQAKSEVRVQLLDYAPLSYGADKTRPYYAVIDNALRSAAARGVSIKLMVSDW HHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC NTGMPEVAYLKSLALVPNVQVRIVTLPMAAQGFIPYARVIHSKTMDIDDQVAWVGTSNWL CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCC GGYLDNSRNLEVVMHDGSMAKRIGQLHEQLWDGPYAKPIDINRDYPEPHPGKP CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA