Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
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Accession | NC_007005 |
Length | 6,093,698 |
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The map label for this gene is serB [H]
Identifier: 66043824
GI number: 66043824
Start: 631007
End: 632263
Strand: Direct
Name: serB [H]
Synonym: Psyr_0557
Alternate gene names: 66043824
Gene position: 631007-632263 (Clockwise)
Preceding gene: 66043822
Following gene: 66043828
Centisome position: 10.36
GC content: 60.14
Gene sequence:
>1257_bases ATGTGGTTAGAATGCGTTTTTTTTCCACTGCGGGGGTGCGCCTTGCGCGAAATCGTCCTGATTAACATCACCGGTGTCGA CCGTCCCGGTCTCACTGCAGCCATCACCGGCGTCCTCGCCCAAGGTGGCGTGAACATTCTCGATATTGGTCAGGCGGTGA TCCATGACACCCTGTCGTTCGGCATCCTGGTTGAAATTCCGGATACTGTGCAGGGATCCTCGGTGCTCAAGGACATCCTG TTCACCGCCTACGAACTGGATCAGCAAGTCCGTTTCACTGCGGTGTCCGAAACCGACTATCAACACTGGGTCGAAGGTCA GGGCAAGGCGCGCCACATCGTTACGCTGCTGACCCGCAAAGTCACGGCCGAGCAATTGCAGCGCGTCAGCGCCATCACTG CCAGGTACGGGCTGAATATCGATCAGATCGACCGGTTGTCCGGTCGCATGCCGCTCGACACCCCGGCTGACAAGGGCAAG GGCTGCATCGAGTTCACCGTGCGCGGCGAGCCCGCCGACCCGAAAGCCATGCAGGCCGAATTTCTCGCGGTCGCCCAGGA TCTCGACGTCGATATCGCGTTCCAGCAGGACTCGCTGTTCCGCCGCAACCGGCGCCTGGCGGTGTTCGACATGGACTCGA CCCTCATCGAGGCCGAAGTCATCGACGAACTGGCCAAGGCCGCAGGCGTCGGCGAGCAGGTTTCCGAGATTACCGAACGT GCCATGCGCGGCGAACTGGATTTCAGCGAAAGCTTCAAGGAACGTCTGGCTTTGCTCAAGGGCCTAGACGTGAGTGTGCT GGATGAAATCGGCGCGTCCCTGCGTTTGACCGAAGGTGCTGAAACACTGTTCTCCGAGCTCAAGCGGCTGGGTTACAAGA CGGCGATTCTGTCGGGAGGCTTCACCTATTTTGCCAAGCAGCTGCAAGCAAAGCTGGGCATTGATTATGTCTTCGCCAAT GAGCTGGAAGTGGTTGACGGCAAGGTGACCGGCGTAGCGGTCGAGCCGATCGTCAATGCGCAGCGCAAGGCCGATCTGTT GCGCGAACTGGCCCACAAGGAAGGGTTGAGCCTGGAGCAGACCATCGCGGTCGGCGACGGTGCCAATGACCTGCCGATGC TGGCGATTGCCGGGCTGGGTGTAGCGTTTCGCGCCAAGCCATTGGTCAAGCAATCGGCCAAACAGGCCATTTCGACGCTG GGGCTCGATGGCGTGCTGTATCTGCTGGGCTTGCGCGACCGCGAGGGAAAGCGCTGA
Upstream 100 bases:
>100_bases GGGCCGGTTCACAGAGCACGGCTCTTTCGGTGAAGTTGTCGCGCAGTATAACGAGCGACCCAGTGGCGGCAAAGCGCTGC CTGTGCCCGGTGGTCACTGA
Downstream 100 bases:
>100_bases CGCTCAGGCCGTCGTGGTCTGCTCCTGATGGCGAGGGGCAATCGCGACGGCTGTCGCAATGATCGCTACAGCGTGCCCCA CAAGGAATCGAATTCCTGAT
Product: phosphoserine phosphatase SerB
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MWLECVFFPLRGCALREIVLINITGVDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSFGILVEIPDTVQGSSVLKDIL FTAYELDQQVRFTAVSETDYQHWVEGQGKARHIVTLLTRKVTAEQLQRVSAITARYGLNIDQIDRLSGRMPLDTPADKGK GCIEFTVRGEPADPKAMQAEFLAVAQDLDVDIAFQQDSLFRRNRRLAVFDMDSTLIEAEVIDELAKAAGVGEQVSEITER AMRGELDFSESFKERLALLKGLDVSVLDEIGASLRLTEGAETLFSELKRLGYKTAILSGGFTYFAKQLQAKLGIDYVFAN ELEVVDGKVTGVAVEPIVNAQRKADLLRELAHKEGLSLEQTIAVGDGANDLPMLAIAGLGVAFRAKPLVKQSAKQAISTL GLDGVLYLLGLRDREGKR
Sequences:
>Translated_418_residues MWLECVFFPLRGCALREIVLINITGVDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSFGILVEIPDTVQGSSVLKDIL FTAYELDQQVRFTAVSETDYQHWVEGQGKARHIVTLLTRKVTAEQLQRVSAITARYGLNIDQIDRLSGRMPLDTPADKGK GCIEFTVRGEPADPKAMQAEFLAVAQDLDVDIAFQQDSLFRRNRRLAVFDMDSTLIEAEVIDELAKAAGVGEQVSEITER AMRGELDFSESFKERLALLKGLDVSVLDEIGASLRLTEGAETLFSELKRLGYKTAILSGGFTYFAKQLQAKLGIDYVFAN ELEVVDGKVTGVAVEPIVNAQRKADLLRELAHKEGLSLEQTIAVGDGANDLPMLAIAGLGVAFRAKPLVKQSAKQAISTL GLDGVLYLLGLRDREGKR >Mature_418_residues MWLECVFFPLRGCALREIVLINITGVDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSFGILVEIPDTVQGSSVLKDIL FTAYELDQQVRFTAVSETDYQHWVEGQGKARHIVTLLTRKVTAEQLQRVSAITARYGLNIDQIDRLSGRMPLDTPADKGK GCIEFTVRGEPADPKAMQAEFLAVAQDLDVDIAFQQDSLFRRNRRLAVFDMDSTLIEAEVIDELAKAAGVGEQVSEITER AMRGELDFSESFKERLALLKGLDVSVLDEIGASLRLTEGAETLFSELKRLGYKTAILSGGFTYFAKQLQAKLGIDYVFAN ELEVVDGKVTGVAVEPIVNAQRKADLLRELAHKEGLSLEQTIAVGDGANDLPMLAIAGLGVAFRAKPLVKQSAKQAISTL GLDGVLYLLGLRDREGKR
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=199, Percent_Identity=34.6733668341709, Blast_Score=87, Evalue=3e-17, Organism=Escherichia coli, GI1790849, Length=226, Percent_Identity=49.1150442477876, Blast_Score=203, Evalue=1e-53, Organism=Saccharomyces cerevisiae, GI6321647, Length=229, Percent_Identity=47.5982532751092, Blast_Score=200, Evalue=4e-52, Organism=Drosophila melanogaster, GI24661601, Length=185, Percent_Identity=30.8108108108108, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 45559; Mature: 45559
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWLECVFFPLRGCALREIVLINITGVDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSF CCEEEEEEHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC GILVEIPDTVQGSSVLKDILFTAYELDQQVRFTAVSETDYQHWVEGQGKARHIVTLLTRK CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHH VTAEQLQRVSAITARYGLNIDQIDRLSGRMPLDTPADKGKGCIEFTVRGEPADPKAMQAE HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHH FLAVAQDLDVDIAFQQDSLFRRNRRLAVFDMDSTLIEAEVIDELAKAAGVGEQVSEITER HHHHHHCCCEEEEECCHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHH AMRGELDFSESFKERLALLKGLDVSVLDEIGASLRLTEGAETLFSELKRLGYKTAILSGG HHCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEECCCHHHHHHHHHHCCCHHHHHCCC FTYFAKQLQAKLGIDYVFANELEVVDGKVTGVAVEPIVNAQRKADLLRELAHKEGLSLEQ HHHHHHHHHHHHCCEEEEECCEEEECCEEEEEEECHHHCHHHHHHHHHHHHHHCCCCHHH TIAVGDGANDLPMLAIAGLGVAFRAKPLVKQSAKQAISTLGLDGVLYLLGLRDREGKR EEEECCCCCCCHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHEECCCCCCCC >Mature Secondary Structure MWLECVFFPLRGCALREIVLINITGVDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSF CCEEEEEEHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC GILVEIPDTVQGSSVLKDILFTAYELDQQVRFTAVSETDYQHWVEGQGKARHIVTLLTRK CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHH VTAEQLQRVSAITARYGLNIDQIDRLSGRMPLDTPADKGKGCIEFTVRGEPADPKAMQAE HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHH FLAVAQDLDVDIAFQQDSLFRRNRRLAVFDMDSTLIEAEVIDELAKAAGVGEQVSEITER HHHHHHCCCEEEEECCHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHH AMRGELDFSESFKERLALLKGLDVSVLDEIGASLRLTEGAETLFSELKRLGYKTAILSGG HHCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEECCCHHHHHHHHHHCCCHHHHHCCC FTYFAKQLQAKLGIDYVFANELEVVDGKVTGVAVEPIVNAQRKADLLRELAHKEGLSLEQ HHHHHHHHHHHHCCEEEEECCEEEECCEEEEEEECHHHCHHHHHHHHHHHHHHCCCCHHH TIAVGDGANDLPMLAIAGLGVAFRAKPLVKQSAKQAISTLGLDGVLYLLGLRDREGKR EEEECCCCCCCHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA