Click here to switch to the map view.

The map label for this gene is cmpD [H]

Identifier: 62390162

GI number: 62390162

Start: 1343927

End: 1344196

Strand: Reverse

Name: cmpD [H]

Synonym: cg1440

Alternate gene names: 62390162

Gene position: 1344196-1343927 (Counterclockwise)

Preceding gene: 62390163

Following gene: 62390161

Centisome position: 40.95

GC content: 54.44

Gene sequence:

>270_bases
ATGACTAAACCAAACGCTTCCGTCGAGCTGAATACGATCACCAAGTCCTACGGCTCCACCACTATCATTGGCGATACGAG
CATCACCATCAACGACGGTGAATTCGTCTCCCTCCTCGACCCTTCCGGCTGCGGAAAATCAACAATTCTCAAAATGATCG
CCGGACTGGCCTCCCCATCCACCGGCACAGTCAGCGCAGGCAACGAAGAAATTAAAGGACCAGGACCTGACCGAGGCATG
GTTTTCCAAGACCACGCCCTCCTGCCCTGA

Upstream 100 bases:

>100_bases
CTCAACCAGCCTGCCACGTTGCTGGATGGACCGTCGTAATCATCGGCATCACCGGCTTAATCCTTGACCACCTCATCGGT
GAGTTGCAGAAAGTAGCGCT

Downstream 100 bases:

>100_bases
TTGACCGCACGCGGCAACATCGACTTCGGCCTCCGCTCCGCGCGCCCCTCCTTGAGCAAAACCGAACGCGCCGACATCAC
CCGCACCCACCTCGAACAAG

Product: ABC-type nitrate/sulfonate/taurine/bicarbonate transport system, ATPase component (N-terminal fragme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MTKPNASVELNTITKSYGSTTIIGDTSITINDGEFVSLLDPSGCGKSTILKMIAGLASPSTGTVSAGNEEIKGPGPDRGM
VFQDHALLP

Sequences:

>Translated_89_residues
MTKPNASVELNTITKSYGSTTIIGDTSITINDGEFVSLLDPSGCGKSTILKMIAGLASPSTGTVSAGNEEIKGPGPDRGM
VFQDHALLP
>Mature_88_residues
TKPNASVELNTITKSYGSTTIIGDTSITINDGEFVSLLDPSGCGKSTILKMIAGLASPSTGTVSAGNEEIKGPGPDRGMV
FQDHALLP

Specific function: Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Responsible for energy coupling to the transport system [H]

COG id: COG1116

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI87081709, Length=92, Percent_Identity=45.6521739130435, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1790467, Length=87, Percent_Identity=43.6781609195402, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI1786563, Length=82, Percent_Identity=37.8048780487805, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI1787370, Length=85, Percent_Identity=43.5294117647059, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI87082267, Length=88, Percent_Identity=42.0454545454545, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI87081791, Length=85, Percent_Identity=40, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1787712, Length=86, Percent_Identity=40.6976744186046, Blast_Score=66, Evalue=4e-13,
Organism=Escherichia coli, GI1788761, Length=85, Percent_Identity=41.1764705882353, Blast_Score=65, Evalue=8e-13,
Organism=Escherichia coli, GI1787164, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR005890 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 9124; Mature: 8993

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPNASVELNTITKSYGSTTIIGDTSITINDGEFVSLLDPSGCGKSTILKMIAGLASPS
CCCCCCCEEEEEEECCCCCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC
TGTVSAGNEEIKGPGPDRGMVFQDHALLP
CCEEECCCCCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure 
TKPNASVELNTITKSYGSTTIIGDTSITINDGEFVSLLDPSGCGKSTILKMIAGLASPS
CCCCCCEEEEEEECCCCCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC
TGTVSAGNEEIKGPGPDRGMVFQDHALLP
CCEEECCCCCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]