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The map label for this gene is yggB [C]

Identifier: 62390157

GI number: 62390157

Start: 1337561

End: 1339162

Strand: Reverse

Name: yggB [C]

Synonym: cg1434

Alternate gene names: 62390157

Gene position: 1339162-1337561 (Counterclockwise)

Preceding gene: 62390161

Following gene: 62390156

Centisome position: 40.79

GC content: 55.24

Gene sequence:

>1602_bases
ATGATTTTAGGCGTACCCATTCAATATTTGCTCTATTCATTGTGGAATTGGATTGTCGATACCGGTTTTGATGTAGCAAT
TATCCTGGTCTTGGCGTTTTTGATTCCACGTATCGGCCGACTGGCCATGCGTATTATCAAGCGCCGAGTGGAGTCTGCAG
CCGATGCGGACACCACTAAGAACCAGCTCGCGTTCGCCGGCGTTGGCGTTTATATCGCGCAAATTGTGGCGTTTTTCATG
CTTGCCGTCTCCGCGATGCAGGCTTTTGGTTTCTCTCTCGCGGGCGCTGCGATTCCGGCAACCATTGCGTCAGCTGCCAT
TGGCCTTGGTGCGCAGTCGATTGTTGCGGACTTCTTGGCCGGATTTTTCATCCTGACGGAAAAGCAATTCGGCGTGGGTG
ACTGGGTGCGTTTTGAGGGCAACGGCATCGTTGTCGAAGGCACCGTCATTGAGATCACCATGCGCGCGACCAAAATTCGC
ACGATTGCACAAGAGACCGTGATCATCCCCAACTCCACGGCGAAAGTGTGCATCAACAATTCTAATAACTGGTCGCGTGC
GGTTGTCGTTATTCCGATCCCCATGTTGGGTTCTGAAAACATCACAGATGTCATCGCGCGCTCTGAAGCTGCGACTCGTC
GCGCACTTGGCCAGGAGAAAATCGCACCGGAAATCCTCGGTGAACTCGATGTGCACCCAGCCACGGAAGTCACGCCGCCA
ACGGTGGTCGGCATGCCGTGGATGGTCACCATGCGTTTCCTCGTGCAAGTCACCGCCGGCAATCAATGGCTGGTCGAACG
CGCCATCCGCACAGAAATCATCAGCGAATTCTGGGAAGAATACGGCAGCGCAACCACTACATCGGGAACCCTCATTGATT
CCTTACACGTTGAGCATGAAGAGCCAAAGACCTCGCTTATCGACGCCTCCCCCCAGGCTCTTAAGGAACCGAAGCCGGAG
GCTGCGGCGACGGTTGCATCGCTAGCTGCATCCTCTAACGACGATGCAGACAATGCAGACGCCTCGGTGATCAATGCAGG
CAATCCAGAGAAGGAACTTGATTCCGATGTGCTGGAACAAGAACTCTCCAGCGAAGAACCGGAAGAAACAGCAAAACCAG
ATCACTCTCTCCGAGGCTTCTTCCGCACTGATTACTACCCAAATCGGTGGCAGAAGATCCTGTCGTTTGGCGGACGTGTC
CGCATGAGCACGTCCCTGTTGTTGGGTGCGCTGCTCTTGCTGTCACTATTTAAGGTCATGACTGTGGAACCAAGTGAGAA
TTGGCAAAACTCCAGTGGATGGCTGTCACCAAGCACTGCCACCTCAACTGCGGTGACCACCTCCGAAACTTCCGCGCCAG
TAAGCACGCCTTCGATGACAGTGCCCACTACGGTGGAGGAGACCCCAACGATGGAATCTAACGTCGAAACGCAGCAGGAA
ACCTCAACCCCTGCAACCGCAACGCCCCAGCGAGCCGACACCATCGAACCGACCGAGGAAGCCACGTCGCAGGAGGAAAC
GACTGCGTCGCAGACGCAGTCTCCAGCAGTGGAAGCACCAACCGCGGTCCAAGAGACAGTTGCGCCGACGTCCACCCCTT
AG

Upstream 100 bases:

>100_bases
AAAATTCCCACCCCCAAAACTCCCCCACTTCGGTTAAGGAATCAGGATTCTCACAAAGTTCAGGCAGGCTCCCGCTACTT
TTCAGCGCTAATCTTGGCTC

Downstream 100 bases:

>100_bases
GACGCTGATTACAGACGTGTCCCATTTCTTTACTACTATTGGAAATTATGAGTTCAGACGCAGAAAAGGCATCCGTGGAG
CTTTCCGAAAAATTTCACCC

Product: small-conductance mechanosensitive channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MILGVPIQYLLYSLWNWIVDTGFDVAIILVLAFLIPRIGRLAMRIIKRRVESAADADTTKNQLAFAGVGVYIAQIVAFFM
LAVSAMQAFGFSLAGAAIPATIASAAIGLGAQSIVADFLAGFFILTEKQFGVGDWVRFEGNGIVVEGTVIEITMRATKIR
TIAQETVIIPNSTAKVCINNSNNWSRAVVVIPIPMLGSENITDVIARSEAATRRALGQEKIAPEILGELDVHPATEVTPP
TVVGMPWMVTMRFLVQVTAGNQWLVERAIRTEIISEFWEEYGSATTTSGTLIDSLHVEHEEPKTSLIDASPQALKEPKPE
AAATVASLAASSNDDADNADASVINAGNPEKELDSDVLEQELSSEEPEETAKPDHSLRGFFRTDYYPNRWQKILSFGGRV
RMSTSLLLGALLLLSLFKVMTVEPSENWQNSSGWLSPSTATSTAVTTSETSAPVSTPSMTVPTTVEETPTMESNVETQQE
TSTPATATPQRADTIEPTEEATSQEETTASQTQSPAVEAPTAVQETVAPTSTP

Sequences:

>Translated_533_residues
MILGVPIQYLLYSLWNWIVDTGFDVAIILVLAFLIPRIGRLAMRIIKRRVESAADADTTKNQLAFAGVGVYIAQIVAFFM
LAVSAMQAFGFSLAGAAIPATIASAAIGLGAQSIVADFLAGFFILTEKQFGVGDWVRFEGNGIVVEGTVIEITMRATKIR
TIAQETVIIPNSTAKVCINNSNNWSRAVVVIPIPMLGSENITDVIARSEAATRRALGQEKIAPEILGELDVHPATEVTPP
TVVGMPWMVTMRFLVQVTAGNQWLVERAIRTEIISEFWEEYGSATTTSGTLIDSLHVEHEEPKTSLIDASPQALKEPKPE
AAATVASLAASSNDDADNADASVINAGNPEKELDSDVLEQELSSEEPEETAKPDHSLRGFFRTDYYPNRWQKILSFGGRV
RMSTSLLLGALLLLSLFKVMTVEPSENWQNSSGWLSPSTATSTAVTTSETSAPVSTPSMTVPTTVEETPTMESNVETQQE
TSTPATATPQRADTIEPTEEATSQEETTASQTQSPAVEAPTAVQETVAPTSTP
>Mature_533_residues
MILGVPIQYLLYSLWNWIVDTGFDVAIILVLAFLIPRIGRLAMRIIKRRVESAADADTTKNQLAFAGVGVYIAQIVAFFM
LAVSAMQAFGFSLAGAAIPATIASAAIGLGAQSIVADFLAGFFILTEKQFGVGDWVRFEGNGIVVEGTVIEITMRATKIR
TIAQETVIIPNSTAKVCINNSNNWSRAVVVIPIPMLGSENITDVIARSEAATRRALGQEKIAPEILGELDVHPATEVTPP
TVVGMPWMVTMRFLVQVTAGNQWLVERAIRTEIISEFWEEYGSATTTSGTLIDSLHVEHEEPKTSLIDASPQALKEPKPE
AAATVASLAASSNDDADNADASVINAGNPEKELDSDVLEQELSSEEPEETAKPDHSLRGFFRTDYYPNRWQKILSFGGRV
RMSTSLLLGALLLLSLFKVMTVEPSENWQNSSGWLSPSTATSTAVTTSETSAPVSTPSMTVPTTVEETPTMESNVETQQE
TSTPATATPQRADTIEPTEEATSQEETTASQTQSPAVEAPTAVQETVAPTSTP

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR006685 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 57321; Mature: 57321

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILGVPIQYLLYSLWNWIVDTGFDVAIILVLAFLIPRIGRLAMRIIKRRVESAADADTTK
CEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
NQLAFAGVGVYIAQIVAFFMLAVSAMQAFGFSLAGAAIPATIASAAIGLGAQSIVADFLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
GFFILTEKQFGVGDWVRFEGNGIVVEGTVIEITMRATKIRTIAQETVIIPNSTAKVCINN
HHHHEECCCCCCCCEEEECCCEEEEEEEEEEEEEHHHHHHHHHHHEEEECCCCEEEEECC
SNNWSRAVVVIPIPMLGSENITDVIARSEAATRRALGQEKIAPEILGELDVHPATEVTPP
CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHCHHHHHCCCCCCCCCCCCC
TVVGMPWMVTMRFLVQVTAGNQWLVERAIRTEIISEFWEEYGSATTTSGTLIDSLHVEHE
CEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCC
EPKTSLIDASPQALKEPKPEAAATVASLAASSNDDADNADASVINAGNPEKELDSDVLEQ
CCCHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHH
ELSSEEPEETAKPDHSLRGFFRTDYYPNRWQKILSFGGRVRMSTSLLLGALLLLSLFKVM
HHCCCCCHHHCCCCHHHCCHHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHH
TVEPSENWQNSSGWLSPSTATSTAVTTSETSAPVSTPSMTVPTTVEETPTMESNVETQQE
CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
TSTPATATPQRADTIEPTEEATSQEETTASQTQSPAVEAPTAVQETVAPTSTP
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MILGVPIQYLLYSLWNWIVDTGFDVAIILVLAFLIPRIGRLAMRIIKRRVESAADADTTK
CEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
NQLAFAGVGVYIAQIVAFFMLAVSAMQAFGFSLAGAAIPATIASAAIGLGAQSIVADFLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
GFFILTEKQFGVGDWVRFEGNGIVVEGTVIEITMRATKIRTIAQETVIIPNSTAKVCINN
HHHHEECCCCCCCCEEEECCCEEEEEEEEEEEEEHHHHHHHHHHHEEEECCCCEEEEECC
SNNWSRAVVVIPIPMLGSENITDVIARSEAATRRALGQEKIAPEILGELDVHPATEVTPP
CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHCHHHHHCCCCCCCCCCCCC
TVVGMPWMVTMRFLVQVTAGNQWLVERAIRTEIISEFWEEYGSATTTSGTLIDSLHVEHE
CEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCC
EPKTSLIDASPQALKEPKPEAAATVASLAASSNDDADNADASVINAGNPEKELDSDVLEQ
CCCHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHH
ELSSEEPEETAKPDHSLRGFFRTDYYPNRWQKILSFGGRVRMSTSLLLGALLLLSLFKVM
HHCCCCCHHHCCCCHHHCCHHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHH
TVEPSENWQNSSGWLSPSTATSTAVTTSETSAPVSTPSMTVPTTVEETPTMESNVETQQE
CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
TSTPATATPQRADTIEPTEEATSQEETTASQTQSPAVEAPTAVQETVAPTSTP
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12948626; 8366043 [H]