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The map label for this gene is perM [C]

Identifier: 62389914

GI number: 62389914

Start: 1080687

End: 1082168

Strand: Reverse

Name: perM [C]

Synonym: cg1166

Alternate gene names: 62389914

Gene position: 1082168-1080687 (Counterclockwise)

Preceding gene: 62389915

Following gene: 62389913

Centisome position: 32.97

GC content: 53.58

Gene sequence:

>1482_bases
GTGGCAACAATGGATGAATTCTCTCAGGTCCCTGACGGTGACCAACATGGCATCAGAGACGACAAAAATGGCGAACCCGT
TAAGTCTGCCAGTGCAGAGCCGACTCCAAGCAAAACTTCTGCTCGGCACCGGGATGCAATTGATCGCGTAGACCGCTCGG
TGGTCATAGGTGATTACTTCAAGAGGGTGTCCATGTGGAGTTTGCGGTTGGTGTTCGTCGCCGCCGCTGTCTTTATTTTA
TGGTGGGTCATTGGTCGGTTCTGGCAGGGCGTTTTGCCGGTCACCTTGGCAATCATCATCTGTACTGTGCTGTCCTCACC
AAACTCATGGTTGCGGAAGCATGGAGTTCCCAGTGTGGTGTCGGCGTTTATCACCATCGGCACGTTTTTTGCCGTCGTGG
GTGCTATTTTGTGGTTAATTGCGCCGAGTATCGCCCAACAATCCCAGGTGTTGTACTTCCAGGCATTTGAGGGCATTTTG
AGCATTCAGCTCTGGCTGCAGGGTCCACCGTTGAACTTGGATTCGGGTGATTTGAGCCGCTACTTCAACGAGGCCGCCGC
GTGGCTGCAAAACCAGGCAGGTGCCATTGCTGGAGAAATCTTCTCGGGCCTGGGCGCTGCAACCAGTGTGATCGTGACGC
TTGGTGTGGTGTTGGTGCTCACATTCTTCTTCCTCAAAGACGGGCACCGGTTCCTCCCGTGGACCAGGAAGATTGGTGGA
AAGCAAGCTGGCTGGCACGTCACCGAGCTGCTCACCCGTGCGTGGACCACCTTGTCTGGATTCGTCCGTGCGCAGGCACT
GGTCTCTGCGGTTGATGCTGTGTTCATTGGCATCGGTCTACTTATTGTGGGCGTTCCCATGGCGTTGGCGCTGTCGGTGA
TTACCTTTGTTGCTGGTTTCATTCCCATCATTGGTGCGTTCACCGCAGGTGCGTTGGCAGTGCTCGTGGCATTAGTCTCG
CTGGGCTTTACCGAAGCGGTCATCGTGCTGGTTATCGTCGTGGCAGTGCAGCAGCTGGAGGGCAATATTTTGTCACCACT
GTTGCAGTCAAAGGCTATGAATTTGCACCCTGTCATCGTGTTGCTGTCGGTAACTGTCGGTGGCACGCTCTTCGGCATTG
TCGGTGCATTCTTGGCAGTACCAGTGGCTGCGATGATTGCTGTATTCTTCCGCTATTTCCAGGACATGACTTCACTACGT
GCTGGCGAGAAGGTGGCTTCTGATCTGAAGTTTGAAAGCGAATACGGCGAGTTCGCTGGCCGTGCCATGGAAGCCGATGG
TGAAATCTTCCGCAGGCGCTACTACCAAGACTTGCTTGGTGGCGACGCTGAGACCAACGAACTGAAAATTCCTGAGTTTT
TAGGTGAGGATCGTGAATCGGTAGATCCTAATGAGGTTCGTCGTAAAGAATTGAAACGACGGTTTACCTCGGCAAGGACG
GCAACTTCGCAAGCATTCGATAAAATACGCAAGAGAAACTGA

Upstream 100 bases:

>100_bases
GACCTGCAACGGCCTAAAGATCTCTGTAGGAAACACTCCCGCCACAGTCGCTGGGAGTGTTTCGTGCTTTAAAACCAAGA
ACCATGCAAAATGGAGAACT

Downstream 100 bases:

>100_bases
GGCTCCATAAAAGCTGCAGAAACTGCAAGTGTAATTAGTAAATAGCAGTTAGATCGGTAAAGTAATCACTCGTGTCACAT
GGATCAGCATCGTCGAGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MATMDEFSQVPDGDQHGIRDDKNGEPVKSASAEPTPSKTSARHRDAIDRVDRSVVIGDYFKRVSMWSLRLVFVAAAVFIL
WWVIGRFWQGVLPVTLAIIICTVLSSPNSWLRKHGVPSVVSAFITIGTFFAVVGAILWLIAPSIAQQSQVLYFQAFEGIL
SIQLWLQGPPLNLDSGDLSRYFNEAAAWLQNQAGAIAGEIFSGLGAATSVIVTLGVVLVLTFFFLKDGHRFLPWTRKIGG
KQAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMALALSVITFVAGFIPIIGAFTAGALAVLVALVS
LGFTEAVIVLVIVVAVQQLEGNILSPLLQSKAMNLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFRYFQDMTSLR
AGEKVASDLKFESEYGEFAGRAMEADGEIFRRRYYQDLLGGDAETNELKIPEFLGEDRESVDPNEVRRKELKRRFTSART
ATSQAFDKIRKRN

Sequences:

>Translated_493_residues
MATMDEFSQVPDGDQHGIRDDKNGEPVKSASAEPTPSKTSARHRDAIDRVDRSVVIGDYFKRVSMWSLRLVFVAAAVFIL
WWVIGRFWQGVLPVTLAIIICTVLSSPNSWLRKHGVPSVVSAFITIGTFFAVVGAILWLIAPSIAQQSQVLYFQAFEGIL
SIQLWLQGPPLNLDSGDLSRYFNEAAAWLQNQAGAIAGEIFSGLGAATSVIVTLGVVLVLTFFFLKDGHRFLPWTRKIGG
KQAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMALALSVITFVAGFIPIIGAFTAGALAVLVALVS
LGFTEAVIVLVIVVAVQQLEGNILSPLLQSKAMNLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFRYFQDMTSLR
AGEKVASDLKFESEYGEFAGRAMEADGEIFRRRYYQDLLGGDAETNELKIPEFLGEDRESVDPNEVRRKELKRRFTSART
ATSQAFDKIRKRN
>Mature_492_residues
ATMDEFSQVPDGDQHGIRDDKNGEPVKSASAEPTPSKTSARHRDAIDRVDRSVVIGDYFKRVSMWSLRLVFVAAAVFILW
WVIGRFWQGVLPVTLAIIICTVLSSPNSWLRKHGVPSVVSAFITIGTFFAVVGAILWLIAPSIAQQSQVLYFQAFEGILS
IQLWLQGPPLNLDSGDLSRYFNEAAAWLQNQAGAIAGEIFSGLGAATSVIVTLGVVLVLTFFFLKDGHRFLPWTRKIGGK
QAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMALALSVITFVAGFIPIIGAFTAGALAVLVALVSL
GFTEAVIVLVIVVAVQQLEGNILSPLLQSKAMNLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFRYFQDMTSLRA
GEKVASDLKFESEYGEFAGRAMEADGEIFRRRYYQDLLGGDAETNELKIPEFLGEDRESVDPNEVRRKELKRRFTSARTA
TSQAFDKIRKRN

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=321, Percent_Identity=26.4797507788162, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87082271, Length=208, Percent_Identity=27.4038461538462, Blast_Score=69, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 53724; Mature: 53593

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCC
>Mature Secondary Structure 
ATMDEFSQVPDGDQHGIRDDKNGEPVKSASAEPTPSKTSARHRDAIDRVDRSVVIGDYF
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]