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The map label for this gene is xerD [H]

Identifier: 59713754

GI number: 59713754

Start: 656429

End: 657343

Strand: Reverse

Name: xerD [H]

Synonym: VF_A0571

Alternate gene names: 59713754

Gene position: 657343-656429 (Counterclockwise)

Preceding gene: 59713757

Following gene: 59713751

Centisome position: 49.41

GC content: 35.08

Gene sequence:

>915_bases
ATGGACAAAAAACACTTTTTATCAGCACAATTAGATATCGATACACTAGCAACGTGTTTAACAAAGCAATACTCAAATAA
CAGTCTTATTTCATTTAAAAATGATTGGAATAATTTTGTCGAATTTTGCCAGTTGAATAATGTTATCGCTCTACCCGCCT
CTACAACGGCTATACGCATCTTCATAGAAAAACAGGCAAAAGTGAAAAAGCTTGCTTCGATAAAACGTGCACTGATTTCG
ATATCTCATATTCATACGGCATTTGAGTATAAAGACCCAACACAATCCATTCAGGTAAAGTCTGCACTAGGAAAAATAAG
AGTCGATAAGGTCAATGATAATAAACAAACGGAAGGTATTTCCTCTGATATGCTGGATGAACTCAGACATCAATTATTCA
ACTCAGTTGAACTCAAAGACATTCGTGATCTTGCCATTTGGTATTTAATGTTTGAATTACTACTAAAGCGCGGAGAACTT
CGAGACTTACAACTTGACGATATTTGTTTTAACGACGAAACAAATTCATGCTTGGTACAAATCCATCAGAATTATTACGC
TATTTCAGAAGAAACAACCGAGTTACTCAATAGATGGCTTCAACATTCAAATATCTATGATGGTCATTTATTTAGAGCTA
TAGATAGACATCAAAATGTGGCAGTTAACGGTTTAAATGATTCTTCTATATACCGTATATTTCGTAGAGCAAATGAGTTA
TTGAACCTTGAAATAAACTTTTCAGGTTTATCTGCACGTGTAGGTGCAACAAAAGAACTCGCACAGCGTGGTTATTCTAT
TCACGAGATACAAGAGATGGGTCGTTGGGTAAGTCCTGCAATGCCAAACCAATATATTGGTAATACGGAACGTTCTGAGA
GACAAAAGTCTGTATTTAAAACAAAAAAAGCCTGA

Upstream 100 bases:

>100_bases
ATCTTCTCTAAATACTAGTTAATTCTTTGTTTTTCGTGATCTTACCTCAAATATGAAACTGTGTTATATTAATTAAAGGC
ATAAGTTATGGTGCATCAGA

Downstream 100 bases:

>100_bases
ATTATCAGGCTTTTTCCATTTAAACCAAACTTACTTAATCGCGTTAAGTACTGCTTTTTGTAAGAAGGTTTTGAAACAAT
CGCCATTATGTTCTAATAAT

Product: DNA integration/recombination/invertion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDKKHFLSAQLDIDTLATCLTKQYSNNSLISFKNDWNNFVEFCQLNNVIALPASTTAIRIFIEKQAKVKKLASIKRALIS
ISHIHTAFEYKDPTQSIQVKSALGKIRVDKVNDNKQTEGISSDMLDELRHQLFNSVELKDIRDLAIWYLMFELLLKRGEL
RDLQLDDICFNDETNSCLVQIHQNYYAISEETTELLNRWLQHSNIYDGHLFRAIDRHQNVAVNGLNDSSIYRIFRRANEL
LNLEINFSGLSARVGATKELAQRGYSIHEIQEMGRWVSPAMPNQYIGNTERSERQKSVFKTKKA

Sequences:

>Translated_304_residues
MDKKHFLSAQLDIDTLATCLTKQYSNNSLISFKNDWNNFVEFCQLNNVIALPASTTAIRIFIEKQAKVKKLASIKRALIS
ISHIHTAFEYKDPTQSIQVKSALGKIRVDKVNDNKQTEGISSDMLDELRHQLFNSVELKDIRDLAIWYLMFELLLKRGEL
RDLQLDDICFNDETNSCLVQIHQNYYAISEETTELLNRWLQHSNIYDGHLFRAIDRHQNVAVNGLNDSSIYRIFRRANEL
LNLEINFSGLSARVGATKELAQRGYSIHEIQEMGRWVSPAMPNQYIGNTERSERQKSVFKTKKA
>Mature_304_residues
MDKKHFLSAQLDIDTLATCLTKQYSNNSLISFKNDWNNFVEFCQLNNVIALPASTTAIRIFIEKQAKVKKLASIKRALIS
ISHIHTAFEYKDPTQSIQVKSALGKIRVDKVNDNKQTEGISSDMLDELRHQLFNSVELKDIRDLAIWYLMFELLLKRGEL
RDLQLDDICFNDETNSCLVQIHQNYYAISEETTELLNRWLQHSNIYDGHLFRAIDRHQNVAVNGLNDSSIYRIFRRANEL
LNLEINFSGLSARVGATKELAQRGYSIHEIQEMGRWVSPAMPNQYIGNTERSERQKSVFKTKKA

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35129; Mature: 35129

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKHFLSAQLDIDTLATCLTKQYSNNSLISFKNDWNNFVEFCQLNNVIALPASTTAIRI
CCCCHHEEHHCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCEEEECCCCEEEEE
FIEKQAKVKKLASIKRALISISHIHTAFEYKDPTQSIQVKSALGKIRVDKVNDNKQTEGI
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCCCCHHCCC
SSDMLDELRHQLFNSVELKDIRDLAIWYLMFELLLKRGELRDLQLDDICFNDETNSCLVQ
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCEEECCCCCHHHEE
IHQNYYAISEETTELLNRWLQHSNIYDGHLFRAIDRHQNVAVNGLNDSSIYRIFRRANEL
EECCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
LNLEINFSGLSARVGATKELAQRGYSIHEIQEMGRWVSPAMPNQYIGNTERSERQKSVFK
EEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHH
TKKA
HCCC
>Mature Secondary Structure
MDKKHFLSAQLDIDTLATCLTKQYSNNSLISFKNDWNNFVEFCQLNNVIALPASTTAIRI
CCCCHHEEHHCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCEEEECCCCEEEEE
FIEKQAKVKKLASIKRALISISHIHTAFEYKDPTQSIQVKSALGKIRVDKVNDNKQTEGI
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCCCCHHCCC
SSDMLDELRHQLFNSVELKDIRDLAIWYLMFELLLKRGELRDLQLDDICFNDETNSCLVQ
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCEEECCCCCHHHEE
IHQNYYAISEETTELLNRWLQHSNIYDGHLFRAIDRHQNVAVNGLNDSSIYRIFRRANEL
EECCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
LNLEINFSGLSARVGATKELAQRGYSIHEIQEMGRWVSPAMPNQYIGNTERSERQKSVFK
EEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHH
TKKA
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]