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The map label for this gene is rdgC [H]

Identifier: 59712596

GI number: 59712596

Start: 2222856

End: 2223770

Strand: Direct

Name: rdgC [H]

Synonym: VF_1989

Alternate gene names: 59712596

Gene position: 2222856-2223770 (Clockwise)

Preceding gene: 59712587

Following gene: 59712597

Centisome position: 76.72

GC content: 39.56

Gene sequence:

>915_bases
ATGATGTGGTTTAAAAATTGTTTAATTTATCGTTTTACTAAAGAGATTGACCTCAATCCAGAACAACTTGAAAAACAACT
GAACGATTTTCGTTTCACGCCATGTGGCAGCCAAGATATGCAAAAATTTGGCTGGGTGACAGCAATGGGCCGACACGGTG
ATATGCTGACTCACGTAGCAAGCAATAATATTCTTATCTGTGCCAAGAAAGAAGAAAAAATGCTTCCTGCATCTGTCATT
AAAGAGTCAATGAATGCAAAAATTGATGCGCTTGAAGCAGAACAAGGTCGCCCACTAAAGAAAAAAGAAAAAGACGCAAT
TAAAGACGATATCGTGGTTGATTTGCTTCCTCGCGCATTCAGCAAACACCAACAAACGTATGCGTTAATCCTCCCTGAAT
CTGGCTTTATCATTGTCGATGCTGGCAGTTACAAAAAAGCAGAAGACGTTTTAGCACTACTTCGTAAATCTATTGGTAGT
CTACCTGTTGTTCCTCTAACATCGACTCAACCAATTGAGAATGCATTAACGGAATGGGTGAAAACAGGCACTTGCCCTCA
AGGCTTTGAAATGGGTGAAGAAGCCGAACTAAAAGCAATTTTAGAAGATGGCGGCGTGATCCGTTGTAAACAACAAGAAC
TTGTATGTGATGAGATCCATGCTCACATTGATGCGAACAAAGTAGTTACAAAATTAGCGCTAACTTGGCAAGAACGTTTA
GAGTTTATCCTTGCCGATGACCTGTCTCTAAAACGTTTAAAATTCAGCGATGAAATTAAAGATCAAAACGAAGATATTGG
TTTTGAAGACAAAGCTGCACGCTTTGATGCAGATTTCTCTCTAATGAGTTCTGAGCTTGATGCACTTCTACCTGATCTTT
TCAAAGCACTTGGTGGCATTGAAGAGAAAGAGTAA

Upstream 100 bases:

>100_bases
ACTTCATAGGGATTTATTTAAGATCCTAAAAACTCTACAAGCATAATTGTTCAAAATTTCATATCATAGGCACACTAAAA
AAAGATAGGAATTCAGCATC

Downstream 100 bases:

>100_bases
AAGCAGGGTTCAGGTCGGATCGCAAGCGAAGCGACCTGAAACCTTTCTTTATACCCTAGCACTTCCCTCACTTTCCATGT
AAAATCCGGCCTCCTTCATA

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MMWFKNCLIYRFTKEIDLNPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMGRHGDMLTHVASNNILICAKKEEKMLPASVI
KESMNAKIDALEAEQGRPLKKKEKDAIKDDIVVDLLPRAFSKHQQTYALILPESGFIIVDAGSYKKAEDVLALLRKSIGS
LPVVPLTSTQPIENALTEWVKTGTCPQGFEMGEEAELKAILEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQERL
EFILADDLSLKRLKFSDEIKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGIEEKE

Sequences:

>Translated_304_residues
MMWFKNCLIYRFTKEIDLNPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMGRHGDMLTHVASNNILICAKKEEKMLPASVI
KESMNAKIDALEAEQGRPLKKKEKDAIKDDIVVDLLPRAFSKHQQTYALILPESGFIIVDAGSYKKAEDVLALLRKSIGS
LPVVPLTSTQPIENALTEWVKTGTCPQGFEMGEEAELKAILEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQERL
EFILADDLSLKRLKFSDEIKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGIEEKE
>Mature_304_residues
MMWFKNCLIYRFTKEIDLNPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMGRHGDMLTHVASNNILICAKKEEKMLPASVI
KESMNAKIDALEAEQGRPLKKKEKDAIKDDIVVDLLPRAFSKHQQTYALILPESGFIIVDAGSYKKAEDVLALLRKSIGS
LPVVPLTSTQPIENALTEWVKTGTCPQGFEMGEEAELKAILEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQERL
EFILADDLSLKRLKFSDEIKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGIEEKE

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=299, Percent_Identity=61.2040133779264, Blast_Score=381, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 34279; Mature: 34279

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMWFKNCLIYRFTKEIDLNPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMGRHGDMLTHVA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHEEC
SNNILICAKKEEKMLPASVIKESMNAKIDALEAEQGRPLKKKEKDAIKDDIVVDLLPRAF
CCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
SKHQQTYALILPESGFIIVDAGSYKKAEDVLALLRKSIGSLPVVPLTSTQPIENALTEWV
HHCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHH
KTGTCPQGFEMGEEAELKAILEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQERL
HCCCCCCCCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
EFILADDLSLKRLKFSDEIKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGI
HHHHHCCCCHHHHCCCHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
EEKE
CCCC
>Mature Secondary Structure
MMWFKNCLIYRFTKEIDLNPEQLEKQLNDFRFTPCGSQDMQKFGWVTAMGRHGDMLTHVA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHEEC
SNNILICAKKEEKMLPASVIKESMNAKIDALEAEQGRPLKKKEKDAIKDDIVVDLLPRAF
CCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
SKHQQTYALILPESGFIIVDAGSYKKAEDVLALLRKSIGSLPVVPLTSTQPIENALTEWV
HHCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHH
KTGTCPQGFEMGEEAELKAILEDGGVIRCKQQELVCDEIHAHIDANKVVTKLALTWQERL
HCCCCCCCCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
EFILADDLSLKRLKFSDEIKDQNEDIGFEDKAARFDADFSLMSSELDALLPDLFKALGGI
HHHHHCCCCHHHHCCCHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
EEKE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA