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The map label for this gene is rnfD [H]

Identifier: 59711539

GI number: 59711539

Start: 1025650

End: 1026645

Strand: Reverse

Name: rnfD [H]

Synonym: VF_0932

Alternate gene names: 59711539

Gene position: 1026645-1025650 (Counterclockwise)

Preceding gene: 59711540

Following gene: 59711538

Centisome position: 35.43

GC content: 38.86

Gene sequence:

>996_bases
ATGAAGATGGTTGCTCTTGCAACTATTCCTGGCTTATTAGCACAAACCTACTTCTTCGGTTGGGGTAATATCATACAAGT
GCTTATTGCTATTTTTACCGCAATTGCATCCGAAGCGATTATTTTAAAATTCAGAAAGAGACCTCTTGCTCCCTATCTAA
GCGATAATAGCGCTCTCTTAACTGGTCTATTATTAGCATTAGCAATTCCACCACTCGCACCTTGGTGGGTAACCGTTATC
GGTGTTGTTTTCGCTATCGTTATCGCTAAACACTTATACGGTGGTTTAGGACAAAACGTATTTAACCCAGCGATGGCTGC
TTATGTTGTCTTATTAATTTCATTCCCGGTACAAATGACAACTTGGTTACCAGTAAAAGAGCTGCTAACAGAAAATATTA
GCTTACTTGATTCACTGTGGCTTATATTTCATGGATTAAGCCAAGATGGATTCTCTGTTCATCAATTAACGATGAATGTT
GATGGCATGACAATGGCTACGCCATTAGATACGATCAAAACAGGATTAAAATCAGGGCTTACTACCTCAGAAGTACTTTC
CTTACCTATTTTTAATGGTTTCGCAGGTTTAGGTTGGTTATGGGTTAACGTTGGATTTTTATTAGGTGGTTTATTCCTTC
TTCAACAACGTCTAACTCACTGGCATATACCGGTTAGTTTTTTAGTCAGCCTATTTATTATTAGCAGCGTATTTGCTTTA
TTCTCACCAGATACAGCAACATCGCCGTTATTTAATCTGTTTTCTGGTGCAACCATGCTAGGGGCATTCTTTATTGCTAC
CGATCCTGTTTCGGCTGCAACCACACCAAAAGGCCGTTTATATTACGGTGCTCTCATTGGTGCTTTAGTTTATATCATAC
GAACTTGGGGTGGTTTTCCTGATGGTGTCGCTTTTGCTGTTTTATTAGCAAATATGTGCGTTCCATTAATTGATTACTAC
ACAAAACCAAGAACTTACGGCCATACTAAAGGATAA

Upstream 100 bases:

>100_bases
GTAAAGCAGCACAAGAAAATAACAAGAAGGAAGAGTAACAGTGGCCTTTTTTATCACTAGCTCACCCCACGCTCATAGCA
AAAAGAGCACAAAACACATT

Downstream 100 bases:

>100_bases
AACAATGCTAACCACAATGAAAAAAAGTAGCCTTGTTTTGGCTCTGTTTGCAATAGCAGCAACCGCACTAGTTACCATTA
CTTATGCATTAACTAAAGAT

Product: inner membrane oxidoreductase (Rnf/Rsx reducing system)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKMVALATIPGLLAQTYFFGWGNIIQVLIAIFTAIASEAIILKFRKRPLAPYLSDNSALLTGLLLALAIPPLAPWWVTVI
GVVFAIVIAKHLYGGLGQNVFNPAMAAYVVLLISFPVQMTTWLPVKELLTENISLLDSLWLIFHGLSQDGFSVHQLTMNV
DGMTMATPLDTIKTGLKSGLTTSEVLSLPIFNGFAGLGWLWVNVGFLLGGLFLLQQRLTHWHIPVSFLVSLFIISSVFAL
FSPDTATSPLFNLFSGATMLGAFFIATDPVSAATTPKGRLYYGALIGALVYIIRTWGGFPDGVAFAVLLANMCVPLIDYY
TKPRTYGHTKG

Sequences:

>Translated_331_residues
MKMVALATIPGLLAQTYFFGWGNIIQVLIAIFTAIASEAIILKFRKRPLAPYLSDNSALLTGLLLALAIPPLAPWWVTVI
GVVFAIVIAKHLYGGLGQNVFNPAMAAYVVLLISFPVQMTTWLPVKELLTENISLLDSLWLIFHGLSQDGFSVHQLTMNV
DGMTMATPLDTIKTGLKSGLTTSEVLSLPIFNGFAGLGWLWVNVGFLLGGLFLLQQRLTHWHIPVSFLVSLFIISSVFAL
FSPDTATSPLFNLFSGATMLGAFFIATDPVSAATTPKGRLYYGALIGALVYIIRTWGGFPDGVAFAVLLANMCVPLIDYY
TKPRTYGHTKG
>Mature_331_residues
MKMVALATIPGLLAQTYFFGWGNIIQVLIAIFTAIASEAIILKFRKRPLAPYLSDNSALLTGLLLALAIPPLAPWWVTVI
GVVFAIVIAKHLYGGLGQNVFNPAMAAYVVLLISFPVQMTTWLPVKELLTENISLLDSLWLIFHGLSQDGFSVHQLTMNV
DGMTMATPLDTIKTGLKSGLTTSEVLSLPIFNGFAGLGWLWVNVGFLLGGLFLLQQRLTHWHIPVSFLVSLFIISSVFAL
FSPDTATSPLFNLFSGATMLGAFFIATDPVSAATTPKGRLYYGALIGALVYIIRTWGGFPDGVAFAVLLANMCVPLIDYY
TKPRTYGHTKG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=332, Percent_Identity=57.2289156626506, Blast_Score=391, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 35933; Mature: 35933

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMVALATIPGLLAQTYFFGWGNIIQVLIAIFTAIASEAIILKFRKRPLAPYLSDNSALL
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
TGLLLALAIPPLAPWWVTVIGVVFAIVIAKHLYGGLGQNVFNPAMAAYVVLLISFPVQMT
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH
TWLPVKELLTENISLLDSLWLIFHGLSQDGFSVHQLTMNVDGMTMATPLDTIKTGLKSGL
HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEECCCHHHHHHHHHCCC
TTSEVLSLPIFNGFAGLGWLWVNVGFLLGGLFLLQQRLTHWHIPVSFLVSLFIISSVFAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FSPDTATSPLFNLFSGATMLGAFFIATDPVSAATTPKGRLYYGALIGALVYIIRTWGGFP
HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
DGVAFAVLLANMCVPLIDYYTKPRTYGHTKG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKMVALATIPGLLAQTYFFGWGNIIQVLIAIFTAIASEAIILKFRKRPLAPYLSDNSALL
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
TGLLLALAIPPLAPWWVTVIGVVFAIVIAKHLYGGLGQNVFNPAMAAYVVLLISFPVQMT
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH
TWLPVKELLTENISLLDSLWLIFHGLSQDGFSVHQLTMNVDGMTMATPLDTIKTGLKSGL
HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEECCCHHHHHHHHHCCC
TTSEVLSLPIFNGFAGLGWLWVNVGFLLGGLFLLQQRLTHWHIPVSFLVSLFIISSVFAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FSPDTATSPLFNLFSGATMLGAFFIATDPVSAATTPKGRLYYGALIGALVYIIRTWGGFP
HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
DGVAFAVLLANMCVPLIDYYTKPRTYGHTKG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA