Click here to switch to the map view.

The map label for this gene is rnfE [H]

Identifier: 59711537

GI number: 59711537

Start: 1024330

End: 1025013

Strand: Reverse

Name: rnfE [H]

Synonym: VF_0930

Alternate gene names: 59711537

Gene position: 1025013-1024330 (Counterclockwise)

Preceding gene: 59711538

Following gene: 59711536

Centisome position: 35.38

GC content: 41.37

Gene sequence:

>684_bases
ATGGCAAGTCATAAAGAATTAGTTAAAAACGGTTTATGGGATAACAACCCTGCCCTAGTTCAACTATTAGGTCTTTGTCC
CTTACTTGCTGTTTCTGCCACAGTGACTAACGCACTTGGTTTAGGCATTGCTACCATCCTAGTTTTGGTTGGCTCAAACC
TAATTGTTTCTTTGGTTCGTCAGTGGATACCACAAGAGGTGCGTATTCCTGTATTCGTAATGATCATCGCTTCACTAGTA
ACTTGTGTGCAATTACTGATGAACGCCTATGCTTATGGTCTTTATTTATCTCTTGGAATATTTATTCCTCTAATTGTTAC
CAACTGCATTATCATTGGACGAGCAGAATCATTTGCTTCAAAAAATGACCCACTTCCTGCCGTTTTAGATGGATTATGGA
TGGGTATGGGAATGACAGCGGTCTTGGTTTTACTCGGCGCAATGCGTGAGATCCTTGGTAACGGTACTTTGTTTGATGGT
GCCGATCTGCTGCTTGGTGATTGGGCAACTATGCTAAGAATTGAACTTTTCCATGTTGATAGCCACTTCCTACTGGCTAT
GCTACCTCCAGGTGCATTCCTTGGCGTTGGATTTCTTATTGCTTTAAAAAACGTCATTGATAAGAAAATGGCCGATCGTC
AACCTAAAGAAAAAGCAGAGATAGAGCGAGCTCGTATTTCGTAA

Upstream 100 bases:

>100_bases
CACCAAGAGCGGTAGTTAAAGCCGTAAAAAGAGCGGTTTGGTTCTATAAGACACATCAAGAAGAGCTGCAAACTCTTCCA
TTAAATTGTGAGACAAAATA

Downstream 100 bases:

>100_bases
CTGTAACTGTAACTGTAACACCATAGGTTAACTTCAAATATCGTGAAAAAGAAAAGGATTTAATTGCTGTATGAATAATG
TAAAACGTTTAGAAATTTTA

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MASHKELVKNGLWDNNPALVQLLGLCPLLAVSATVTNALGLGIATILVLVGSNLIVSLVRQWIPQEVRIPVFVMIIASLV
TCVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAESFASKNDPLPAVLDGLWMGMGMTAVLVLLGAMREILGNGTLFDG
ADLLLGDWATMLRIELFHVDSHFLLAMLPPGAFLGVGFLIALKNVIDKKMADRQPKEKAEIERARIS

Sequences:

>Translated_227_residues
MASHKELVKNGLWDNNPALVQLLGLCPLLAVSATVTNALGLGIATILVLVGSNLIVSLVRQWIPQEVRIPVFVMIIASLV
TCVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAESFASKNDPLPAVLDGLWMGMGMTAVLVLLGAMREILGNGTLFDG
ADLLLGDWATMLRIELFHVDSHFLLAMLPPGAFLGVGFLIALKNVIDKKMADRQPKEKAEIERARIS
>Mature_226_residues
ASHKELVKNGLWDNNPALVQLLGLCPLLAVSATVTNALGLGIATILVLVGSNLIVSLVRQWIPQEVRIPVFVMIIASLVT
CVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAESFASKNDPLPAVLDGLWMGMGMTAVLVLLGAMREILGNGTLFDGA
DLLLGDWATMLRIELFHVDSHFLLAMLPPGAFLGVGFLIALKNVIDKKMADRQPKEKAEIERARIS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=210, Percent_Identity=64.2857142857143, Blast_Score=267, Evalue=4e-73,
Organism=Escherichia coli, GI1787914, Length=142, Percent_Identity=35.2112676056338, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24546; Mature: 24415

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASHKELVKNGLWDNNPALVQLLGLCPLLAVSATVTNALGLGIATILVLVGSNLIVSLVR
CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
QWIPQEVRIPVFVMIIASLVTCVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAESFAS
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHCC
KNDPLPAVLDGLWMGMGMTAVLVLLGAMREILGNGTLFDGADLLLGDWATMLRIELFHVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
SHFLLAMLPPGAFLGVGFLIALKNVIDKKMADRQPKEKAEIERARIS
CHHEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
ASHKELVKNGLWDNNPALVQLLGLCPLLAVSATVTNALGLGIATILVLVGSNLIVSLVR
CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
QWIPQEVRIPVFVMIIASLVTCVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAESFAS
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHCC
KNDPLPAVLDGLWMGMGMTAVLVLLGAMREILGNGTLFDGADLLLGDWATMLRIELFHVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
SHFLLAMLPPGAFLGVGFLIALKNVIDKKMADRQPKEKAEIERARIS
CHHEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA