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The map label for this gene is xp55 [H]

Identifier: 59711288

GI number: 59711288

Start: 742488

End: 744158

Strand: Reverse

Name: xp55 [H]

Synonym: VF_0681

Alternate gene names: 59711288

Gene position: 744158-742488 (Counterclockwise)

Preceding gene: 172087674

Following gene: 59711287

Centisome position: 25.68

GC content: 37.7

Gene sequence:

>1671_bases
ATGCAGTTCGTAAATGCATTCTCTCATTTACCTGCACTACTTCTTTTATATTGGAAAAAAGTTGTGAATACATTACTGAA
TAAAATGAATAGAAAAAAAACACGTATTCTTTCTCTATTTATTTGTACCTTACTAACGATGACAAGCTTTGTTGCGCTAG
CGACAACATCCCCTTCTAAATACCCAGAAACCTTAAAAGTTGCTCTTGGCAGCGAACCGAACACTGGATTTGATCCAATT
CTTGGGTGGGGTAAGTACGGTAATCCACTCTTCCAATCGACGTTATTAAAAAGAGATAAAAACTTAAATTTTGTTGGCGA
TTTAGCAACGAAATGGCGTCTAACGAACAACAAATTAACTTGGATCGTCACTCTTCGTGATGATGTTGTTTTTAGTAACG
GTACACCATTAACAGCTGAAGACGTTGCGTTTACCTTTAATCAAATCTTAGCACAAGGTAGTACTCACGATTTAAGTGCG
TTAGAAATGGCTGAACCATTAACGCCGACTTCCGTCGCTTTTCATTTAAAGCGATGTGATATCACCTTTTTAGATCGCCT
ATCTTCTATTGGTATTGTTCCAAAAAAATATTATCAACTACGTTCTGATAGCCCGACAAAATATGGCGCATTACCTATGG
GGTCTGGTCCTTACATCTTAAATAAATGGGAAAAAGGCCAATACGTAAGCATGAGTTTAAACCCTTACTATTACGCTAAA
AAACCAAAATTCAAAAATATCGTTGCCGTATTTGGAAGCGAAGAATCACGATTTATTCAGATAAAAACACATCAACTTCA
TTTGAGTGTGATACCTCAACGTTATGCGAATCAGAGCATCAGTAATTACAAACTATGGTCAGTACCTACACTAGACAACC
GAGGTATTGTTTGGCCTATGAGTCATCATAAAGGCTCAGACATGACATTTGTAAGCTCAGATCCTGCAATTCGTGAAGCA
TTTGAATGCCTTATCGACAAACAATTGATCGTAGAAAAATTACTGGATGGCTATGCTACACCAGCCTACTCACTCGCAGA
TAATATGCCATGGGGGTTAGATACCACATCAATTGTACCTACCCCTGTTAATTTAGCGCATATCACAACACTACTTAAAC
AAGCAGGATGGAGTGACAGTAATAACAATGGCACTATCGATAAACAAGGTTATGAAGCTTCTTTTACCCTTCTTTATAAA
GCTGGAGATAGTGTGCGAGAGCAATTAGCTTTAGCCATTAGCTCAATGGCAAATCAAATTGGAATAGAAGTAACCGTCAA
AGGGTTAGAGTGGAACGCCATTGCTCTACAAATGACAACAACACCTGTTCTTATGGGATTTGGTAGTCATTCTGCAAGCG
AAGTAAATTATGTTTATCATTCTGACTTTGCTCATACTGATTTTTATAATTCAGGTGGCTACAGTAACCCTGAAGTTGAT
TTAGCTATTGATAACGCATTAAAAGCAGATACTTGGGATGAATCAATTCCTTTTTGGCAACAAGCTCAAAAACAAATTCA
GCAAGATCGCCCTTGGACGTGGTTAGTTAATATTAATCACTTATATATGGCTGATAGCTGTTTGAATTTAGGATTACCAA
TTACTGAGCCTCATGATCACGGCTGGCCTTTAACTGCAAATATTGAAGAATGGCGTTGGCAGTGTCGTTAA

Upstream 100 bases:

>100_bases
CTAACTACTAATGAATCGTTGCCTTTATGTAAGGTGCTTTGTATTGCCTCAAATATAATTTTTATATTGAAGATAAAGTG
AGATCGCCACTTAATTTCTA

Downstream 100 bases:

>100_bases
ACTCTCAGCAGTCACGCATTGTTTGCTTTAGTATCACACGCTTACTACTGCAACTTTGCTTGGCTTTATTGGTTATTAGC
TTATTGATTGCGTTTCTCCC

Product: oligopeptide-binding protein OppA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 556

Protein sequence:

>556_residues
MQFVNAFSHLPALLLLYWKKVVNTLLNKMNRKKTRILSLFICTLLTMTSFVALATTSPSKYPETLKVALGSEPNTGFDPI
LGWGKYGNPLFQSTLLKRDKNLNFVGDLATKWRLTNNKLTWIVTLRDDVVFSNGTPLTAEDVAFTFNQILAQGSTHDLSA
LEMAEPLTPTSVAFHLKRCDITFLDRLSSIGIVPKKYYQLRSDSPTKYGALPMGSGPYILNKWEKGQYVSMSLNPYYYAK
KPKFKNIVAVFGSEESRFIQIKTHQLHLSVIPQRYANQSISNYKLWSVPTLDNRGIVWPMSHHKGSDMTFVSSDPAIREA
FECLIDKQLIVEKLLDGYATPAYSLADNMPWGLDTTSIVPTPVNLAHITTLLKQAGWSDSNNNGTIDKQGYEASFTLLYK
AGDSVREQLALAISSMANQIGIEVTVKGLEWNAIALQMTTTPVLMGFGSHSASEVNYVYHSDFAHTDFYNSGGYSNPEVD
LAIDNALKADTWDESIPFWQQAQKQIQQDRPWTWLVNINHLYMADSCLNLGLPITEPHDHGWPLTANIEEWRWQCR

Sequences:

>Translated_556_residues
MQFVNAFSHLPALLLLYWKKVVNTLLNKMNRKKTRILSLFICTLLTMTSFVALATTSPSKYPETLKVALGSEPNTGFDPI
LGWGKYGNPLFQSTLLKRDKNLNFVGDLATKWRLTNNKLTWIVTLRDDVVFSNGTPLTAEDVAFTFNQILAQGSTHDLSA
LEMAEPLTPTSVAFHLKRCDITFLDRLSSIGIVPKKYYQLRSDSPTKYGALPMGSGPYILNKWEKGQYVSMSLNPYYYAK
KPKFKNIVAVFGSEESRFIQIKTHQLHLSVIPQRYANQSISNYKLWSVPTLDNRGIVWPMSHHKGSDMTFVSSDPAIREA
FECLIDKQLIVEKLLDGYATPAYSLADNMPWGLDTTSIVPTPVNLAHITTLLKQAGWSDSNNNGTIDKQGYEASFTLLYK
AGDSVREQLALAISSMANQIGIEVTVKGLEWNAIALQMTTTPVLMGFGSHSASEVNYVYHSDFAHTDFYNSGGYSNPEVD
LAIDNALKADTWDESIPFWQQAQKQIQQDRPWTWLVNINHLYMADSCLNLGLPITEPHDHGWPLTANIEEWRWQCR
>Mature_556_residues
MQFVNAFSHLPALLLLYWKKVVNTLLNKMNRKKTRILSLFICTLLTMTSFVALATTSPSKYPETLKVALGSEPNTGFDPI
LGWGKYGNPLFQSTLLKRDKNLNFVGDLATKWRLTNNKLTWIVTLRDDVVFSNGTPLTAEDVAFTFNQILAQGSTHDLSA
LEMAEPLTPTSVAFHLKRCDITFLDRLSSIGIVPKKYYQLRSDSPTKYGALPMGSGPYILNKWEKGQYVSMSLNPYYYAK
KPKFKNIVAVFGSEESRFIQIKTHQLHLSVIPQRYANQSISNYKLWSVPTLDNRGIVWPMSHHKGSDMTFVSSDPAIREA
FECLIDKQLIVEKLLDGYATPAYSLADNMPWGLDTTSIVPTPVNLAHITTLLKQAGWSDSNNNGTIDKQGYEASFTLLYK
AGDSVREQLALAISSMANQIGIEVTVKGLEWNAIALQMTTTPVLMGFGSHSASEVNYVYHSDFAHTDFYNSGGYSNPEVD
LAIDNALKADTWDESIPFWQQAQKQIQQDRPWTWLVNINHLYMADSCLNLGLPITEPHDHGWPLTANIEEWRWQCR

Specific function: Required for transport of an unidentified substrate [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=431, Percent_Identity=26.6821345707657, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1789887, Length=442, Percent_Identity=24.2081447963801, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787052, Length=454, Percent_Identity=24.4493392070485, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 62658; Mature: 62658

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFVNAFSHLPALLLLYWKKVVNTLLNKMNRKKTRILSLFICTLLTMTSFVALATTSPSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCC
YPETLKVALGSEPNTGFDPILGWGKYGNPLFQSTLLKRDKNLNFVGDLATKWRLTNNKLT
CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCEEEEEECCEEE
WIVTLRDDVVFSNGTPLTAEDVAFTFNQILAQGSTHDLSALEMAEPLTPTSVAFHLKRCD
EEEEEECCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHEEEEECCC
ITFLDRLSSIGIVPKKYYQLRSDSPTKYGALPMGSGPYILNKWEKGQYVSMSLNPYYYAK
HHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCEEEEC
KPKFKNIVAVFGSEESRFIQIKTHQLHLSVIPQRYANQSISNYKLWSVPTLDNRGIVWPM
CCCCCCEEEEECCCCCEEEEEEEEEEEEEECCHHHCCCCCCCEEEEECCCCCCCCEEEEC
SHHKGSDMTFVSSDPAIREAFECLIDKQLIVEKLLDGYATPAYSLADNMPWGLDTTSIVP
CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCC
TPVNLAHITTLLKQAGWSDSNNNGTIDKQGYEASFTLLYKAGDSVREQLALAISSMANQI
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHC
GIEVTVKGLEWNAIALQMTTTPVLMGFGSHSASEVNYVYHSDFAHTDFYNSGGYSNPEVD
CEEEEEEEEEEEEEEEEEECCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEE
LAIDNALKADTWDESIPFWQQAQKQIQQDRPWTWLVNINHLYMADSCLNLGLPITEPHDH
EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCEEEEECHHHHCCCCCCCCCCC
GWPLTANIEEWRWQCR
CCCEECCHHHHHEECC
>Mature Secondary Structure
MQFVNAFSHLPALLLLYWKKVVNTLLNKMNRKKTRILSLFICTLLTMTSFVALATTSPSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCC
YPETLKVALGSEPNTGFDPILGWGKYGNPLFQSTLLKRDKNLNFVGDLATKWRLTNNKLT
CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCEEEEEECCEEE
WIVTLRDDVVFSNGTPLTAEDVAFTFNQILAQGSTHDLSALEMAEPLTPTSVAFHLKRCD
EEEEEECCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHEEEEECCC
ITFLDRLSSIGIVPKKYYQLRSDSPTKYGALPMGSGPYILNKWEKGQYVSMSLNPYYYAK
HHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCEEEEC
KPKFKNIVAVFGSEESRFIQIKTHQLHLSVIPQRYANQSISNYKLWSVPTLDNRGIVWPM
CCCCCCEEEEECCCCCEEEEEEEEEEEEEECCHHHCCCCCCCEEEEECCCCCCCCEEEEC
SHHKGSDMTFVSSDPAIREAFECLIDKQLIVEKLLDGYATPAYSLADNMPWGLDTTSIVP
CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCC
TPVNLAHITTLLKQAGWSDSNNNGTIDKQGYEASFTLLYKAGDSVREQLALAISSMANQI
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHC
GIEVTVKGLEWNAIALQMTTTPVLMGFGSHSASEVNYVYHSDFAHTDFYNSGGYSNPEVD
CEEEEEEEEEEEEEEEEEECCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEE
LAIDNALKADTWDESIPFWQQAQKQIQQDRPWTWLVNINHLYMADSCLNLGLPITEPHDH
EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCEEEEECHHHHCCCCCCCCCCC
GWPLTANIEEWRWQCR
CCCEECCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]