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The map label for this gene is yliC [C]

Identifier: 59711287

GI number: 59711287

Start: 741514

End: 742509

Strand: Reverse

Name: yliC [C]

Synonym: VF_0680

Alternate gene names: 59711287

Gene position: 742509-741514 (Counterclockwise)

Preceding gene: 59711288

Following gene: 59711286

Centisome position: 25.63

GC content: 38.86

Gene sequence:

>996_bases
ATGGCGTTGGCAGTGTCGTTAAACTCTCAGCAGTCACGCATTGTTTGCTTTAGTATCACACGCTTACTACTGCAACTTTG
CTTGGCTTTATTGGTTATTAGCTTATTGATTGCGTTTCTCCCAATCGATCCTATTGCTCAATACTTTAATGGAAACGTGC
TTGCCGTATTTGGTGAACAAAAAGCACAGTTAATCGAACAGCTCGGATTAGACCAATCTATTCTTGAGCAAATAATGACA
TTTAGTCACGCTTTGTTATCTGGTGAATTAGGTTACTCGTATCACCGTCAAGAAGAGGTTAGCCAAATCATCTGGCAACG
CAGTCGCTACTCTTTTATTTTAATGGGAAGTGCGAGTCTAGTTGCCCTGATTTTAGGTTACGGGATTGGTCTTGTTATTG
GGTTAAAACCAAAGGCAATATCAAGCAAAATCATTACACAATTAGCACTAATGGTAAATTCAATACCAAGCTTTTGGATT
GGCTTACTCTTAATCACGATTTTTGCCGTTAAATTGATTTGGTTACCCGTTGGTGGCTTAGCCCCGATTGGGGTATCTCC
TGAATCAATTTCCTTTTATGACAAAATCCCATATTTTATTTTGCCATTAATAACACTAACACTTGGATTAATCGCTCCAA
TCATTTTGCATACCAAAGAGAAGGTTATTGAAGTCGCTCAAAGCCAACATGTGAAATACGCTCGTATTCATGGGTTATCG
ACCTTATCGATTGTTCGTTTTCACTTACTAAGAAATACGTTAATACCGGCGATTGTTATTCAACTGGCAGGTTTTTCAGA
ATTATTCAGTGGCTCAGTCATTATTGAAACGGTGTTTAACTTCCCTGGGTTGGGTCAAACCCTAGTGCAAGCGGGACTAA
GCGGTGATACTCCTCTATTACTCGGTATTACATTATGCTGCGCTCTATTTGTTTTTATTGGTAATGCTACTGCATCATTG
TTAAGTAAACGACTTTCGTTATCGACATCGTTTTAA

Upstream 100 bases:

>100_bases
ATATTAATCACTTATATATGGCTGATAGCTGTTTGAATTTAGGATTACCAATTACTGAGCCTCATGATCACGGCTGGCCT
TTAACTGCAAATATTGAAGA

Downstream 100 bases:

>100_bases
TTTTAAAGGGGATGTTCCATGCTTAAAAAGCACCTTCCTTTATTATTGTTTTGCATATTAATTCTGATTTCCATTACTTG
GCAAAACAATGGCGAAACCA

Product: oligopeptide transport system permease protein OppB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MALAVSLNSQQSRIVCFSITRLLLQLCLALLVISLLIAFLPIDPIAQYFNGNVLAVFGEQKAQLIEQLGLDQSILEQIMT
FSHALLSGELGYSYHRQEEVSQIIWQRSRYSFILMGSASLVALILGYGIGLVIGLKPKAISSKIITQLALMVNSIPSFWI
GLLLITIFAVKLIWLPVGGLAPIGVSPESISFYDKIPYFILPLITLTLGLIAPIILHTKEKVIEVAQSQHVKYARIHGLS
TLSIVRFHLLRNTLIPAIVIQLAGFSELFSGSVIIETVFNFPGLGQTLVQAGLSGDTPLLLGITLCCALFVFIGNATASL
LSKRLSLSTSF

Sequences:

>Translated_331_residues
MALAVSLNSQQSRIVCFSITRLLLQLCLALLVISLLIAFLPIDPIAQYFNGNVLAVFGEQKAQLIEQLGLDQSILEQIMT
FSHALLSGELGYSYHRQEEVSQIIWQRSRYSFILMGSASLVALILGYGIGLVIGLKPKAISSKIITQLALMVNSIPSFWI
GLLLITIFAVKLIWLPVGGLAPIGVSPESISFYDKIPYFILPLITLTLGLIAPIILHTKEKVIEVAQSQHVKYARIHGLS
TLSIVRFHLLRNTLIPAIVIQLAGFSELFSGSVIIETVFNFPGLGQTLVQAGLSGDTPLLLGITLCCALFVFIGNATASL
LSKRLSLSTSF
>Mature_330_residues
ALAVSLNSQQSRIVCFSITRLLLQLCLALLVISLLIAFLPIDPIAQYFNGNVLAVFGEQKAQLIEQLGLDQSILEQIMTF
SHALLSGELGYSYHRQEEVSQIIWQRSRYSFILMGSASLVALILGYGIGLVIGLKPKAISSKIITQLALMVNSIPSFWIG
LLLITIFAVKLIWLPVGGLAPIGVSPESISFYDKIPYFILPLITLTLGLIAPIILHTKEKVIEVAQSQHVKYARIHGLST
LSIVRFHLLRNTLIPAIVIQLAGFSELFSGSVIIETVFNFPGLGQTLVQAGLSGDTPLLLGITLCCALFVFIGNATASLL
SKRLSLSTSF

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=290, Percent_Identity=29.6551724137931, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789965, Length=281, Percent_Identity=27.7580071174377, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787497, Length=264, Percent_Identity=29.5454545454545, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1789888, Length=306, Percent_Identity=27.7777777777778, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787550, Length=218, Percent_Identity=31.651376146789, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787761, Length=322, Percent_Identity=26.0869565217391, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788504, Length=286, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36020; Mature: 35888

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALAVSLNSQQSRIVCFSITRLLLQLCLALLVISLLIAFLPIDPIAQYFNGNVLAVFGEQ
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCH
KAQLIEQLGLDQSILEQIMTFSHALLSGELGYSYHRQEEVSQIIWQRSRYSFILMGSASL
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHH
VALILGYGIGLVIGLKPKAISSKIITQLALMVNSIPSFWIGLLLITIFAVKLIWLPVGGL
HHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
APIGVSPESISFYDKIPYFILPLITLTLGLIAPIILHTKEKVIEVAQSQHVKYARIHGLS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCH
TLSIVRFHLLRNTLIPAIVIQLAGFSELFSGSVIIETVFNFPGLGQTLVQAGLSGDTPLL
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHCCCCCCHHHHHCCCCCCCHHH
LGITLCCALFVFIGNATASLLSKRLSLSTSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALAVSLNSQQSRIVCFSITRLLLQLCLALLVISLLIAFLPIDPIAQYFNGNVLAVFGEQ
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCH
KAQLIEQLGLDQSILEQIMTFSHALLSGELGYSYHRQEEVSQIIWQRSRYSFILMGSASL
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHH
VALILGYGIGLVIGLKPKAISSKIITQLALMVNSIPSFWIGLLLITIFAVKLIWLPVGGL
HHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
APIGVSPESISFYDKIPYFILPLITLTLGLIAPIILHTKEKVIEVAQSQHVKYARIHGLS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCH
TLSIVRFHLLRNTLIPAIVIQLAGFSELFSGSVIIETVFNFPGLGQTLVQAGLSGDTPLL
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHCCCCCCHHHHHCCCCCCCHHH
LGITLCCALFVFIGNATASLLSKRLSLSTSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA