Click here to switch to the map view.

The map label for this gene is yafV [C]

Identifier: 55980872

GI number: 55980872

Start: 863842

End: 864444

Strand: Reverse

Name: yafV [C]

Synonym: TTHA0903

Alternate gene names: 55980872

Gene position: 864444-863842 (Counterclockwise)

Preceding gene: 55980873

Following gene: 55980871

Centisome position: 46.73

GC content: 71.48

Gene sequence:

>603_bases
TTGCTCCTCCCCGAGCTCGTCCTGGGCAAACGGGAGGACCCCGGGCTTCCCCAGGCCCTTAGGGAGCTTGCGGAAGAGGC
GGGGCTTCTCCTCCTCGCGGGGCACCTCGCGGAAGGAGAAAACCGCCTGCAAGCCTTCCCCCAAGGCCCCGCCTACGCCA
AGCTCCACCTCTACCGGGCGGAGGGGGAAGAGGGGGACGAGGGCCTCCGCCCCGGGGAAAGGCCCCTCCTCCTCCCTTGG
GAGGGCCGGGCCTTCGGGCTTGCCCTCTGCTACGACCTGGACTTCCCCGAGCTCTTCCGGGCCTACGCCCTGAAGGGGGC
GCAGGGGTTTCTCGTGGGGGCGGCCTGGCCCGGGGAGTACGCCGGGCTTTTGGAGGTCCTCGCCCGGGCCCGGGCGGCGG
AGAACCAGGCCTACCTCTTCCTGGCGAGCCGCGCGGACACGGGAAGCCCCTCCCTCTTCGTCGCGCCCGACGGGCGGGTC
TTGGCGCGGAGGGAGGAGGAAGGCCTCCTCGTCGCCGAGCCCGACTGGGGTTTCCTCGAGGCCTACCGCAAGAAGTACCC
CCTCCTCCGCCACCGCCGGGAGGAGCTCTACCGGCTTTGGTAA

Upstream 100 bases:

>100_bases
GCCTCGCCCTGGCCCACCTGGCCAAGCGGGAAAGCCTAAGGGAGCTCCTCCAGGCCCTCCGCCCCTGGCCCAAGAGGCCC
GGGAGCGGGGGGCGGGGCTT

Downstream 100 bases:

>100_bases
GATGGCCCCCGTGCTGGAGAACCGCCGCGCGCGGCACGACTACGAGATCCTGGAAACCTACGAGGCGGGCATCGCCCTCA
AAGGGACCGAGGTGAAGTCC

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MLLPELVLGKREDPGLPQALRELAEEAGLLLLAGHLAEGENRLQAFPQGPAYAKLHLYRAEGEEGDEGLRPGERPLLLPW
EGRAFGLALCYDLDFPELFRAYALKGAQGFLVGAAWPGEYAGLLEVLARARAAENQAYLFLASRADTGSPSLFVAPDGRV
LARREEEGLLVAEPDWGFLEAYRKKYPLLRHRREELYRLW

Sequences:

>Translated_200_residues
MLLPELVLGKREDPGLPQALRELAEEAGLLLLAGHLAEGENRLQAFPQGPAYAKLHLYRAEGEEGDEGLRPGERPLLLPW
EGRAFGLALCYDLDFPELFRAYALKGAQGFLVGAAWPGEYAGLLEVLARARAAENQAYLFLASRADTGSPSLFVAPDGRV
LARREEEGLLVAEPDWGFLEAYRKKYPLLRHRREELYRLW
>Mature_200_residues
MLLPELVLGKREDPGLPQALRELAEEAGLLLLAGHLAEGENRLQAFPQGPAYAKLHLYRAEGEEGDEGLRPGERPLLLPW
EGRAFGLALCYDLDFPELFRAYALKGAQGFLVGAAWPGEYAGLLEVLARARAAENQAYLFLASRADTGSPSLFVAPDGRV
LARREEEGLLVAEPDWGFLEAYRKKYPLLRHRREELYRLW

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI9910460, Length=209, Percent_Identity=30.1435406698565, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI5031947, Length=124, Percent_Identity=41.1290322580645, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI297632350, Length=136, Percent_Identity=39.7058823529412, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI297632348, Length=124, Percent_Identity=41.1290322580645, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17556280, Length=170, Percent_Identity=33.5294117647059, Blast_Score=71, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6323383, Length=217, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010
- InterPro:   IPR001110 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: 3.5.-.- [C]

Molecular weight: Translated: 22355; Mature: 22355

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50263 CN_HYDROLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLPELVLGKREDPGLPQALRELAEEAGLLLLAGHLAEGENRLQAFPQGPAYAKLHLYRA
CCCCHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHCCCCCCCEEEEEEEEC
EGEEGDEGLRPGERPLLLPWEGRAFGLALCYDLDFPELFRAYALKGAQGFLVGAAWPGEY
CCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCHH
AGLLEVLARARAAENQAYLFLASRADTGSPSLFVAPDGRVLARREEEGLLVAEPDWGFLE
HHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCCEEEEECCCCEEEECCCCHHHH
AYRKKYPLLRHRREELYRLW
HHHHHCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLPELVLGKREDPGLPQALRELAEEAGLLLLAGHLAEGENRLQAFPQGPAYAKLHLYRA
CCCCHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHCCCCCCCEEEEEEEEC
EGEEGDEGLRPGERPLLLPWEGRAFGLALCYDLDFPELFRAYALKGAQGFLVGAAWPGEY
CCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCHH
AGLLEVLARARAAENQAYLFLASRADTGSPSLFVAPDGRVLARREEEGLLVAEPDWGFLE
HHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCCEEEEECCCCEEEECCCCHHHH
AYRKKYPLLRHRREELYRLW
HHHHHCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]